Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_H24
(561 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60FC2|CFDP1_TRAJA Craniofacial development protein 1 (B... 89 6e-18
sp|Q4ADK7|CFDP1_CAMDR Craniofacial development protein 1 (B... 88 1e-17
sp|Q9UEE9|CFDP1_HUMAN Craniofacial development protein 1 (B... 87 3e-17
sp|Q8HXY9|CFDP1_BOVIN Craniofacial development protein 1 (B... 87 3e-17
sp|Q4ADK4|CFDP1_MUNRE Craniofacial development protein 1 (B... 87 4e-17
sp|Q75QI0|CFDP1_CHICK Craniofacial development protein 1 (B... 84 2e-16
sp|P38326|SWC5_YEAST SWR1-complex protein 5 45 2e-04
sp|Q9MTH5|YCF1_OENHO Hypothetical 287.9 kDa protein ycf1 43 6e-04
sp|O14974|MYPT1_HUMAN Protein phosphatase 1 regulatory subu... 39 0.009
sp|P39730|IF2P_YEAST Eukaryotic translation initiation fact... 39 0.009
>sp|Q60FC2|CFDP1_TRAJA Craniofacial development protein 1 (Bucentaur) (h-type BCNT
protein)
Length = 298
Score = 89.4 bits (220), Expect = 6e-18
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 50/197 (25%)
Frame = +1
Query: 73 QTAEEKEKNEKQLWESFKTDV----------------EKEKSLPAKISEKSEQDKTKEDI 204
++ + ++K E +LW SF DV E E++ + + + EQ+K KE
Sbjct: 101 ESEDARKKKEDELWASFLNDVGPKSKVPPSTPVKTGEETEETSSSNLVKAEEQEKPKET- 159
Query: 205 IEKTKVNFVSSNATPNLKLLTQKRPA----------------------------AAAGLS 300
EK K+ V A +++ + P A +GL
Sbjct: 160 -EKVKITKVFDFAGEEVRVTKEVDPTSKEAKSFFKQSEKEKPQPNVPSAVSSLPAGSGLK 218
Query: 301 ----LGNILGQ--NKKPKQNMLQKSKEDWDKFVDEEGIKNDLKIFNRGKHGFLERKAFEA 462
+ ++LG+ KK K + L+KSK DW+ F +EEGI +L I NRGK G++ERKAF
Sbjct: 219 RSSGMSSLLGKIGAKKQKMSTLEKSKLDWENFKEEEGIAEELAIHNRGKEGYIERKAFLD 278
Query: 463 RTELKQYEIERDLRLQK 513
R + +Q+EIERDLRL K
Sbjct: 279 RVDHRQFEIERDLRLSK 295
>sp|Q4ADK7|CFDP1_CAMDR Craniofacial development protein 1 (Bucentaur)
Length = 297
Score = 88.2 bits (217), Expect = 1e-17
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 49/193 (25%)
Frame = +1
Query: 82 EEKEKNEKQLWESFKTDVEKEKSLPAKISEKSEQDK---------TKEDIIEKTK----- 219
+ ++K E +LW SF DV + +P K E++ K + +EK K
Sbjct: 102 DARKKKEDELWASFLNDVGPKSKVPPSTQVKREEETEETGSSKLLVKAEELEKPKETEKV 161
Query: 220 ------------------VNFVSSNATPNLKLLTQKRPA-----------AAAGLS---- 300
V+ S A K +++P A +GL
Sbjct: 162 KITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNEKEKPQTNVPAALPSLPAGSGLKRSSG 221
Query: 301 LGNILGQ--NKKPKQNMLQKSKEDWDKFVDEEGIKNDLKIFNRGKHGFLERKAFEARTEL 474
+ N+LG+ KK K + L+KSK DW+ F +EEGI +L I NRGK G++ERKAF R +
Sbjct: 222 MSNLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDH 281
Query: 475 KQYEIERDLRLQK 513
+Q+EIERDLRL K
Sbjct: 282 RQFEIERDLRLSK 294
>sp|Q9UEE9|CFDP1_HUMAN Craniofacial development protein 1 (Bucentaur)
Length = 299
Score = 87.0 bits (214), Expect = 3e-17
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 4 EVSQESDLEEYKSNKNIKTVLPEQTAEEKEKNEKQLWESFKTDVEKEKSLPAKISEKSEQ 183
+V + + EE S+K + V E+ + KE + ++ + F E E + ++ S++
Sbjct: 132 QVKKGEETEETSSSKLL--VKAEELEKPKETEKVKITKVFDFAGE-EVRVTKEVDATSKE 188
Query: 184 DKT--KEDIIEKTKVNFVSSNATPNLKLLTQKRPAAAAGLSLGNILGQNKKPKQNMLQKS 357
K+ K++ EK + N S A P+L + + ++ LG I KK K + L+KS
Sbjct: 189 AKSFFKQNEKEKPQANVPS--ALPSLPAGSGLKRSSGMSSLLGKIGA--KKQKMSTLEKS 244
Query: 358 KEDWDKFVDEEGIKNDLKIFNRGKHGFLERKAFEARTELKQYEIERDLRLQK 513
K DW+ F +EEGI +L I NRGK G++ERKAF R + +Q+EIERDLRL K
Sbjct: 245 KLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIERDLRLSK 296
>sp|Q8HXY9|CFDP1_BOVIN Craniofacial development protein 1 (Bucentaur) (h-type BCNT
protein)
Length = 297
Score = 87.0 bits (214), Expect = 3e-17
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 48/195 (24%)
Frame = +1
Query: 73 QTAEEKEKNEKQLWESFKTDVEKEKSLP----AKISEKSEQDKT----KEDIIEKTK--- 219
++ + ++K E +LW SF DV + +P K E++E+ + K + +EK K
Sbjct: 100 ESEDARKKKEDELWASFLNDVGPKSKVPPSTHVKTGEETEETSSSHLVKAERLEKPKETE 159
Query: 220 --------------------VNFVSSNATPNLKLLTQKRPA-----------AAAGLS-- 300
V+ S A K +++P A +GL
Sbjct: 160 KVKITKVFDFAGEEVRVIKEVDATSKEAKSFFKQNEKEKPQSNVPPAVPSLPAGSGLKRS 219
Query: 301 --LGNILGQ--NKKPKQNMLQKSKEDWDKFVDEEGIKNDLKIFNRGKHGFLERKAFEART 468
+ ++LG+ KK K + L+KSK DW+ F +EEGI +L I NRGK G++ERKAF R
Sbjct: 220 SGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRV 279
Query: 469 ELKQYEIERDLRLQK 513
+ +Q+EIERDLRL K
Sbjct: 280 DHRQFEIERDLRLSK 294
>sp|Q4ADK4|CFDP1_MUNRE Craniofacial development protein 1 (Bucentaur)
Length = 298
Score = 86.7 bits (213), Expect = 4e-17
Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 49/198 (24%)
Frame = +1
Query: 73 QTAEEKEKNEKQLWESFKTDVEKEKSLPA----------------------KISEKSEQD 186
++ + ++K E +LW SF DV + +P K+ + E +
Sbjct: 101 ESEDARKKKEDELWASFLNDVGPKSKVPPSTHVKTGEETEETSSSHLVKAEKLEKPQETE 160
Query: 187 KTK---------EDIIEKTKVNFVSSNATPNLKLLTQKRP-----------AAAAGLS-- 300
K K E++ +V+ S A K +++P +A +GL
Sbjct: 161 KVKITKVFDFAGEEVRVIKEVDATSKEAKSFFKQNEKEKPQSNISSSVPSLSAGSGLKRS 220
Query: 301 --LGNILGQ--NKKPKQNMLQKSKEDWDKFVDEEGIKNDLKIFNRGKHGFLERKAFEART 468
+ ++LG+ KK K + L+KSK DW+ F +EEGI +L I NRGK G++ERKAF R
Sbjct: 221 SGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRV 280
Query: 469 ELKQYEIERDLRL-QKKP 519
+ +Q+EIERDLRL Q KP
Sbjct: 281 DHRQFEIERDLRLSQMKP 298
>sp|Q75QI0|CFDP1_CHICK Craniofacial development protein 1 (Bucentaur)
Length = 290
Score = 84.3 bits (207), Expect = 2e-16
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 44/215 (20%)
Frame = +1
Query: 1 LEVSQESDLEEYKSNKNIKTVLPEQTAEEKEKNEKQLWESFKTDVEKEKSLPA------- 159
++ +E +E + ++ + EE++K E LW SF +DV ++ A
Sbjct: 73 VDEKEEGKAQENEDEEDDLKQSEKDREEEEKKKEDALWASFLSDVGQKPKAAATQATHAD 132
Query: 160 ---------------KISEKSEQ----------DKTKEDIIEKTKVNFVSSNATPNLKLL 264
K SEK + D E++ +V+ S A LK
Sbjct: 133 KAGEVKSVNKLQGKPKESEKPKDSGRVTITKVFDFAGEEVRVTKEVDSSSKEAKSFLKQQ 192
Query: 265 TQKRPAAAAGL----------SLGNILGQ--NKKPKQNMLQKSKEDWDKFVDEEGIKNDL 408
+ + +A L + ++LG+ +KK K + L+KSK DW+ F +EEGI +L
Sbjct: 193 EKWQSSAPGSLPTVSGVKRPSGISSLLGKIGSKKQKMSTLEKSKLDWENFKEEEGIVEEL 252
Query: 409 KIFNRGKHGFLERKAFEARTELKQYEIERDLRLQK 513
I NRGK G++ERKAF R + +Q+EIERD+RL +
Sbjct: 253 AIHNRGKDGYIERKAFLERVDHRQFEIERDIRLSR 287
>sp|P38326|SWC5_YEAST SWR1-complex protein 5
Length = 303
Score = 44.7 bits (104), Expect = 2e-04
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +1
Query: 301 LGNILGQNKKPKQNMLQKSKEDWDKFVDEEGIKNDLKIFNRGKHGFLERKAFEARTELKQ 480
L I+ +PK L+KS+ DW +VD G+ ++L + N K GFL R+ F R +
Sbjct: 223 LEQIISGGLRPKLTTLEKSQLDWASYVDRAGLNDELVLHN--KDGFLARQEFLQRVGSAE 280
Query: 481 YEIERDLRLQK 513
E ++LR Q+
Sbjct: 281 DERYKELRRQQ 291
>sp|Q9MTH5|YCF1_OENHO Hypothetical 287.9 kDa protein ycf1
Length = 2434
Score = 42.7 bits (99), Expect = 6e-04
Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Frame = +1
Query: 1 LEVSQESDLEEYKSN--KNIKTVLPEQTAEEKEKNEKQLWESFKTDVEKEKSLPAKISEK 174
+E ++ ++E++K K ++ + A++K +NEK+ E+ + +EKEK + EK
Sbjct: 2045 IEKKRQKEIEKHKRKIEKQMRKKEKIENAKKKIENEKKKIETEEEKLEKEKRKKERKKEK 2104
Query: 175 SEQDKTKEDIIEKTKVNFVSSNATPNLKLLTQKRPAAAAGLSLGNILGQNKKPKQNMLQK 354
++ K IEK K N V+ N N++ L ++R A L + + K+ ++ +Q+
Sbjct: 2105 LKKKVAKN--IEKLK-NKVAKNVAKNIEKLKKQRAKNIARLEEEDKKARKKRKRKVQVQE 2161
Query: 355 SK--------EDWDKFVDEEGIKNDLKIF 417
+K + W + + E D++ F
Sbjct: 2162 NKILYTAFGSDKWQRPIAEYPKSGDIRNF 2190
>sp|O14974|MYPT1_HUMAN Protein phosphatase 1 regulatory subunit 12A (Myosin phosphatase
targeting subunit 1) (Myosin phosphatase target subunit
1) (Protein phosphatase myosin-binding subunit)
Length = 1030
Score = 38.9 bits (89), Expect = 0.009
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Frame = +1
Query: 19 SDLEEYKSN--KNIKTVLPEQTAEEKEKNEKQLWESFKTDVEKEKSLPAKISEKSEQDKT 192
+DL+E + ++ T EQ EEKEK EK+ + K + +KE + K + +T
Sbjct: 702 TDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRT 761
Query: 193 KEDIIEKTKVNFVSSNATPNLKLLTQ----------KRPAAAAGLSLGNILGQNKKPKQ- 339
++ ++ + SS+ TP+ L T RP + G++ G K+ ++
Sbjct: 762 YDETYQRYRPVSTSSSTTPSSSLSTMSSSLYASSQLNRPNSLVGITSAYSRGITKENERE 821
Query: 340 -NMLQKSKEDWDK 375
++ KE DK
Sbjct: 822 GEKREEEKEGEDK 834
>sp|P39730|IF2P_YEAST Eukaryotic translation initiation factor 5B (eIF-5B) (Translation
initiation factor IF-2)
Length = 1002
Score = 38.9 bits (89), Expect = 0.009
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Frame = +1
Query: 52 IKTVLPEQTAEEKEKNEKQLWESFKTDVEKEKSLPAKISEKSEQDKTKEDIIEKTKVNFV 231
+K L EQ E+E+ E+ E + +EK + K E++K K + K + +
Sbjct: 179 LKKQLEEQEKLEREEEERLEKEEEERLANEEKMKEEAKAAKKEKEKAKREK-RKAEGKLL 237
Query: 232 SSNATPNLKLLTQKRPAAAAGLSLGNIL--------GQNKKPKQNMLQKSKEDWDKFVDE 387
+ KLL ++R AA LS GN+ G+ KPK+ + K K+ +
Sbjct: 238 TRKQKEEKKLLERRR---AALLSSGNVKVAGLAKKDGEENKPKKVVYSKKKKRTTQENAS 294
Query: 388 EGIKNDLK 411
E IK+D K
Sbjct: 295 EAIKSDSK 302
Score = 38.1 bits (87), Expect = 0.015
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 10/181 (5%)
Frame = +1
Query: 13 QESDLEEYKSNKNIKTVLPEQTAEEKEKNEKQLWE----------SFKTDVEKEKSLPAK 162
QE + E K K+ K +L + +EKEK EK+ + + EK K L +
Sbjct: 73 QEKKVIEEK--KDGKPILKSKKEKEKEKKEKEKQKKKEQAARKKAQQQAQKEKNKELNKQ 130
Query: 163 ISEKSEQDKTKEDIIEKTKVNFVSSNATPNLKLLTQKRPAAAAGLSLGNILGQNKKPKQN 342
EK+ +K + +K+K S + + K +K PA A L L + + +Q
Sbjct: 131 NVEKAAAEKAAAEKSQKSKGE--SDKPSASAKKPAKKVPAGLAALRRQLEL-KKQLEEQE 187
Query: 343 MLQKSKEDWDKFVDEEGIKNDLKIFNRGKHGFLERKAFEARTELKQYEIERDLRLQKKPN 522
L++ +E+ + +EE + N+ K+ K E++ +A+ E ++ E + R QK+
Sbjct: 188 KLEREEEERLEKEEEERLANEEKMKEEAKAAKKEKE--KAKREKRKAEGKLLTRKQKEEK 245
Query: 523 K 525
K
Sbjct: 246 K 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,995,785
Number of Sequences: 369166
Number of extensions: 980577
Number of successful extensions: 5071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4990
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)