Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_H21
(385 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8X187|CALM_PAXIN Calmodulin (CaM) 86 2e-17
sp|P41041|CALM_PNECA Calmodulin (CaM) 85 4e-17
sp|P84339|CALM_AGABI Calmodulin (CaM) 85 4e-17
sp|O94739|CALM_PLEOS Calmodulin (CaM) 84 1e-16
sp|P11120|CALM_PLECO Calmodulin (CaM) 84 1e-16
sp|O96102|CALM_PHYPO Calmodulin (CaM) 83 2e-16
sp|P11118|CALM_EUGGR Calmodulin (CaM) 83 2e-16
sp|P18061|CALM_TRYCR Calmodulin (CaM) 83 2e-16
sp|P69098|CALM_TRYBG Calmodulin (CaM) >gi|59799173|sp|P6909... 82 3e-16
sp|Q40302|CALM_MACPY Calmodulin (CaM) 82 4e-16
>sp|Q8X187|CALM_PAXIN Calmodulin (CaM)
Length = 149
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
++K AFKVFDKDGNG I ELR M NLGE LT+ E+D MI+EAD DGDG I++DEF K
Sbjct: 85 EIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDEFVK 144
Query: 182 MFLAE 196
M L++
Sbjct: 145 MMLSK 149
Score = 62.8 bits (151), Expect = 2e-10
Identities = 31/61 (50%), Positives = 38/61 (62%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+ K AF +FDKDG+G I +EL M +LG+ TE EL MI E D DG+G I F EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLT 71
Query: 182 M 184
M
Sbjct: 72 M 72
>sp|P41041|CALM_PNECA Calmodulin (CaM)
Length = 151
Score = 85.1 bits (209), Expect = 4e-17
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+++ AFKVFDKDGNGII ELR M NLGE LT+ E+D MI+EAD DGDG+I + EF K
Sbjct: 87 EIREAFKVFDKDGNGIISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGVIDYSEFVK 146
Query: 182 MFLAE 196
M L++
Sbjct: 147 MMLSK 151
Score = 64.3 bits (155), Expect = 8e-11
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+ K AF +FDKDG+G I +EL M +LG+ TEAEL M+ E D DG+G I F EF
Sbjct: 14 EFKEAFSLFDKDGDGSITTKELGIVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLA 73
Query: 182 M 184
M
Sbjct: 74 M 74
>sp|P84339|CALM_AGABI Calmodulin (CaM)
Length = 148
Score = 85.1 bits (209), Expect = 4e-17
Identities = 40/65 (61%), Positives = 51/65 (78%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
++K AFKVFDKDGNG I ELR M NLGE LT++E+D MI+EAD DGDG I+++EF K
Sbjct: 84 EIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDSEVDEMIREADVDGDGQINYEEFVK 143
Query: 182 MFLAE 196
M L++
Sbjct: 144 MMLSK 148
Score = 62.4 bits (150), Expect = 3e-10
Identities = 30/61 (49%), Positives = 40/61 (65%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+ K AF +FDKDG+G I +EL M +LG+ ++AEL+ MI E D DG+G I F EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPSQAELEDMINEVDADGNGTIDFPEFLT 70
Query: 182 M 184
M
Sbjct: 71 M 71
>sp|O94739|CALM_PLEOS Calmodulin (CaM)
Length = 149
Score = 84.0 bits (206), Expect = 1e-16
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
++K AFKVFDKDGNG I ELR M NLGE LT+ E+D MI+EAD DGDG I+++EF K
Sbjct: 85 EIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADVDGDGQINYEEFVK 144
Query: 182 MFLAE 196
M L++
Sbjct: 145 MMLSK 149
Score = 64.3 bits (155), Expect = 8e-11
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+ K AF +FDKDG+G I +EL M +LG+ TEAEL MI E D DG+G I F EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 182 M 184
M
Sbjct: 72 M 72
>sp|P11120|CALM_PLECO Calmodulin (CaM)
Length = 148
Score = 84.0 bits (206), Expect = 1e-16
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
++K AFKVFDKDGNG I ELR M NLGE LT+ E+D MI+EAD DGDG I+++EF K
Sbjct: 84 EIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADIDGDGQINYEEFVK 143
Query: 182 MFLAE 196
M L++
Sbjct: 144 MMLSK 148
Score = 64.3 bits (155), Expect = 8e-11
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+ K AF +FDKDG+G I +EL M +LG+ TEAEL MI E D DG+G I F EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 70
Query: 182 M 184
M
Sbjct: 71 M 71
>sp|O96102|CALM_PHYPO Calmodulin (CaM)
Length = 149
Score = 83.2 bits (204), Expect = 2e-16
Identities = 38/65 (58%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+++ AFKVFDKDGNG I ELR M NLGE L++ E+D MI+EAD DGDG +++DEF K
Sbjct: 85 EIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDEFVK 144
Query: 182 MFLAE 196
M L++
Sbjct: 145 MMLSK 149
Score = 63.5 bits (153), Expect = 1e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+ K AF +FDKDG+G I +EL M +LG+ TEAEL MI E D DG+G I F EF
Sbjct: 12 EFKEAFSLFDKDGDGNITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 182 M 184
M
Sbjct: 72 M 72
>sp|P11118|CALM_EUGGR Calmodulin (CaM)
Length = 148
Score = 82.8 bits (203), Expect = 2e-16
Identities = 38/65 (58%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
++K AF+VFDKDGNG I ELR M NLGE LT+ E+D MI+EAD DGDG I+++EF K
Sbjct: 84 EIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 143
Query: 182 MFLAE 196
M +++
Sbjct: 144 MMMSK 148
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEF 175
+ K AF +FDKDG+G I +EL M +LG+ TEAEL MI E D DG G I F EF
Sbjct: 11 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEF 68
>sp|P18061|CALM_TRYCR Calmodulin (CaM)
Length = 149
Score = 82.8 bits (203), Expect = 2e-16
Identities = 38/65 (58%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
++K AF+VFDKDGNG I ELR M NLGE LT+ E+D MI+EAD DGDG I+++EF K
Sbjct: 85 EIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144
Query: 182 MFLAE 196
M +++
Sbjct: 145 MMMSK 149
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEF 175
+ K AF +FDKDG+G I +EL M +LG+ TEAEL MI E D DG G I F EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEF 69
>sp|P69098|CALM_TRYBG Calmodulin (CaM)
sp|P69097|CALM_TRYBB Calmodulin (CaM)
Length = 149
Score = 82.4 bits (202), Expect = 3e-16
Identities = 38/65 (58%), Positives = 50/65 (76%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
++K AF+VFDKDGNG I ELR M NLGE LT+ E+D MI+EAD DGDG I+++EF K
Sbjct: 85 EIKEAFRVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144
Query: 182 MFLAE 196
M +++
Sbjct: 145 MMMSK 149
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEF 175
+ K AF +FDKDG+G I +EL M +LG+ TEAEL MI E D DG G I F EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEF 69
>sp|Q40302|CALM_MACPY Calmodulin (CaM)
Length = 149
Score = 82.0 bits (201), Expect = 4e-16
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +2
Query: 14 AFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSKMFLA 193
AFKVFDKDGNG I ELR M NLGE LT+ E+D MI+EAD DGDG I+++EF KM +A
Sbjct: 89 AFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMA 148
Query: 194 E 196
+
Sbjct: 149 K 149
Score = 64.3 bits (155), Expect = 8e-11
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +2
Query: 2 DMKAAFKVFDKDGNGIIDREELRFAMENLGEVLTEAELDSMIQEADCDGDGLISFDEFSK 181
+ K AF +FDKDG+G I +EL M +LG+ TEAEL MI E D DG+G I F EF
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 182 M 184
M
Sbjct: 72 M 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,999,600
Number of Sequences: 369166
Number of extensions: 743343
Number of successful extensions: 3082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)