Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_G24
(217 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N4J0|CI041_HUMAN Protein C9orf41 31 0.77
sp|Q80UY1|CI041_MOUSE Protein C9orf41 homolog 29 2.9
sp|Q9Z0J1|RECK_MOUSE Reversion-inducing cysteine-rich prote... 29 2.9
sp|Q5BJZ6|CI041_RAT Protein C9orf41 homolog 29 3.8
>sp|Q8N4J0|CI041_HUMAN Protein C9orf41
Length = 409
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 189 KQISVFLSHIQYNPPFRWCIDLNMELLLGILQYILHKFSGKPY 61
K + FL H+ R CID N E+LL I+ +H F K Y
Sbjct: 100 KLLPQFLLHLD---KIRKCIDHNQEILLTIVNDCIHMFENKEY 139
>sp|Q80UY1|CI041_MOUSE Protein C9orf41 homolog
Length = 400
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 141 RWCIDLNMELLLGILQYILHKFSGKPY 61
R CID N E+LL I+ +H F K Y
Sbjct: 104 RKCIDHNQEILLTIVNDCIHMFENKEY 130
>sp|Q9Z0J1|RECK_MOUSE Reversion-inducing cysteine-rich protein with Kazal motifs
precursor (mRECK)
Length = 971
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 6 FIMFVVVAMLQADDEQEKYKACQKTYVKCIAGCRGAVPCSNQCTTEMEDCTGYEKG 173
FI V+ + E K AC C + RG++ C + C ++ C KG
Sbjct: 394 FISIPVLDIKTCQPEMWKAVACSLQIKPCHSKSRGSIICKSDCVEILKKCGDQPKG 449
>sp|Q5BJZ6|CI041_RAT Protein C9orf41 homolog
Length = 400
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 141 RWCIDLNMELLLGILQYILHKFSGKPY 61
R C+D N E+LL I+ +H F K Y
Sbjct: 104 RKCVDHNQEILLTIVNDCIHMFENKEY 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,454,192
Number of Sequences: 369166
Number of extensions: 444846
Number of successful extensions: 1175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)