Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_G15
(427 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 76 3e-14
sp|Q9BW30|CG38_HUMAN Protein CGI-38 76 3e-14
sp|P59282|P25B_HUMAN Protein p25-beta 74 1e-13
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 71 8e-13
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 70 2e-12
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 69 5e-12
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 65 6e-11
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 64 1e-10
sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase... 32 0.73
sp|P10611|CP4A4_RABIT Cytochrome P450 4A4 precursor (CYPIVA... 30 2.1
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 76.3 bits (186), Expect = 3e-14
Identities = 51/112 (45%), Positives = 61/112 (54%), Gaps = 20/112 (17%)
Frame = +3
Query: 9 SARNLAYED---AVQELKTK-------------ICQ----GSPAGHGTTGVSADAATARL 128
SAR + YE+ A++EL TK ICQ PA G T A RL
Sbjct: 66 SARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLIAGKEPANIGVTKAKTGGAVDRL 125
Query: 129 TDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGTYDKK 284
TD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK AGTYD K
Sbjct: 126 TDTSKYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKNAGTYDAK 173
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 76.3 bits (186), Expect = 3e-14
Identities = 51/112 (45%), Positives = 61/112 (54%), Gaps = 20/112 (17%)
Frame = +3
Query: 9 SARNLAYED---AVQELKTK-------------ICQ----GSPAGHGTTGVSADAATARL 128
SAR + YE+ A++EL TK ICQ PA G T A RL
Sbjct: 66 SARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGAVDRL 125
Query: 129 TDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGTYDKK 284
TD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK AGTYD K
Sbjct: 126 TDTSRYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKNAGTYDAK 173
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 74.3 bits (181), Expect = 1e-13
Identities = 40/70 (57%), Positives = 44/70 (62%)
Frame = +3
Query: 75 PAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGG 254
PA G T + A RLTD YTG HKE FD E+GKGKGI GRE + GYV G
Sbjct: 103 PATTGATKATTVGAVDRLTDTSKYTGTHKELFD-ESGKGKGIAGREEMTDNT---GYVSG 158
Query: 255 YKGAGTYDKK 284
YKG+GTYDKK
Sbjct: 159 YKGSGTYDKK 168
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 71.2 bits (173), Expect = 8e-13
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = +3
Query: 30 EDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGR 209
E+AV+E+ I +P G T + +RLTD +TG+HKERFD ++GKGKG GR
Sbjct: 133 EEAVREVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKERFD-QSGKGKGKAGR 191
Query: 210 EYLAGENAQQGYVGGYKGAGTYDKK 284
L E+ GYV GYK AGTYD+K
Sbjct: 192 VDLVDES---GYVPGYKHAGTYDQK 213
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 70.1 bits (170), Expect = 2e-12
Identities = 41/85 (48%), Positives = 52/85 (61%)
Frame = +3
Query: 30 EDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGR 209
E+AV+E+ I +P G T + +RLTD +TG+HKERFD +GKGKG GR
Sbjct: 134 EEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFD-PSGKGKGKAGR 192
Query: 210 EYLAGENAQQGYVGGYKGAGTYDKK 284
L E+ GYV GYK AGTYD+K
Sbjct: 193 VDLVDES---GYVSGYKHAGTYDQK 214
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 68.6 bits (166), Expect = 5e-12
Identities = 40/85 (47%), Positives = 52/85 (61%)
Frame = +3
Query: 30 EDAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGR 209
E+AV+E+ I +P G T + +RLTD +TG+HKERFD +G+GKG GR
Sbjct: 133 EEAVREVHKLIEGKAPIISGVTKAISSPTVSRLTDTSKFTGSHKERFD-PSGRGKGRAGR 191
Query: 210 EYLAGENAQQGYVGGYKGAGTYDKK 284
L E+ GYV GYK AGTYD+K
Sbjct: 192 VDLVDES---GYVPGYKHAGTYDQK 213
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 65.1 bits (157), Expect = 6e-11
Identities = 40/83 (48%), Positives = 47/83 (56%)
Frame = +3
Query: 33 DAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGRE 212
DA+ E K+ +P+ G +A +RLTD YTGAHKERFDAE GKGKG GR
Sbjct: 100 DAITEKLAKL--EAPSVGGAAKANAAGVYSRLTDHTKYTGAHKERFDAE-GKGKGKSGR- 155
Query: 213 YLAGENAQQGYVGGYKGAGTYDK 281
A GYVG YK +YDK
Sbjct: 156 --ADTTENTGYVGAYKNKDSYDK 176
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 64.3 bits (155), Expect = 1e-10
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 39 VQELKTKICQ-GSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREY 215
+ E+K K+ G+P + A AA RLTD YTG+HKERFDA +GKGKGI GR
Sbjct: 113 LSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYTGSHKERFDA-SGKGKGIAGRRN 171
Query: 216 LAGENAQQGYVGGYKGAGTYD 278
+ + GYV GY+ TYD
Sbjct: 172 VVDGS---GYVSGYQHKDTYD 189
>sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
(tRNA [GM37] methyltransferase)
Length = 245
Score = 31.6 bits (70), Expect = 0.73
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 135 HLSNEQLPHQQKL-RLYHGRQDYLDRF*FSILVLRLHKPNFLHSYK 1
H + EQ H+QKL R YH R D LDR+ L F+ SYK
Sbjct: 199 HANIEQWRHEQKLIRTYHKRPDLLDRY-----PLTEDDEKFIESYK 239
>sp|P10611|CP4A4_RABIT Cytochrome P450 4A4 precursor (CYPIVA4) (Prostaglandin
omega-hydroxylase) (P450-P-2)
Length = 510
Score = 30.0 bits (66), Expect = 2.1
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 270 FLHLCNHQHNLVVHFHRRDILYHQYLYLYRFLHRIVLYVHQCNL*HLSNEQLPHQQKLRL 91
++ N +NLV F+R ++HQ +LYR L+ C L H +++ Q+K +L
Sbjct: 217 YIQAINDLNNLV--FYRARNVFHQSDFLYRLSPEGRLFHRACQLAHEHTDRVIQQRKAQL 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,873,611
Number of Sequences: 369166
Number of extensions: 761784
Number of successful extensions: 2349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2334
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)