Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_G12
(835 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R478|WBP2_RAT WW domain-binding protein 2 (WBP-2) 53 1e-06
sp|Q969T9|WBP2_HUMAN WW domain-binding protein 2 (WBP-2) 51 4e-06
sp|P97765|WBP2_MOUSE WW domain-binding protein 2 (WBP-2) 50 8e-06
sp|Q10207|YBX1_SCHPO Hypothetical protein C17D1.01 in chrom... 32 2.2
sp|Q06994|RFAB_SALTY Lipopolysaccharide 1,6-galactosyltrans... 32 2.8
sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precurso... 30 6.3
sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precurso... 30 8.2
>sp|Q8R478|WBP2_RAT WW domain-binding protein 2 (WBP-2)
Length = 262
Score = 52.8 bits (125), Expect = 1e-06
Identities = 45/170 (26%), Positives = 64/170 (37%)
Frame = +2
Query: 176 GTMLFSITFKHGGAIEFGEALLEAGRRATRGQPLWNPAENFFSVPVGXXXXXXXXXXXXX 355
G+ + +TF GGAIEFG+ +L+ +A+RG+ + N A + +P G
Sbjct: 106 GSASYKLTFTAGGAIEFGQQMLQVASQASRGE-VPNGAYGYPYMPSGAYVFPPPVANGMY 164
Query: 356 XXXXXXXNFVPQHESFVQPNGTQIYMYGTXXXXXXXXXXXXXXXQNGAVPQPQIPTNYDK 535
P E + P M G + V P P
Sbjct: 165 PCPPGYPYPPPPPEFYPGPP----MMDGAMGYVQPPPPPYPGPMEPPVVSGPSAPPTPAA 220
Query: 536 EMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSYSFVDKK 685
E +A +A YY+ NPH+VY+ S PP PP Y DKK
Sbjct: 221 EAKAAEAAASAYYNPGNPHNVYMPTSQPPP----------PPYYPPEDKK 260
>sp|Q969T9|WBP2_HUMAN WW domain-binding protein 2 (WBP-2)
Length = 261
Score = 50.8 bits (120), Expect = 4e-06
Identities = 43/170 (25%), Positives = 64/170 (37%)
Frame = +2
Query: 176 GTMLFSITFKHGGAIEFGEALLEAGRRATRGQPLWNPAENFFSVPVGXXXXXXXXXXXXX 355
G+ + +TF GGAIEFG+ +L+ +A+RG+ + + A + +P G
Sbjct: 106 GSASYKLTFTAGGAIEFGQRMLQVASQASRGE-VPSGAYGYSYMPSGAYVYPPPVANGMY 164
Query: 356 XXXXXXXNFVPQHESFVQPNGTQIYMYGTXXXXXXXXXXXXXXXQNGAVPQPQIPTNYDK 535
P E + P M V P +P+
Sbjct: 165 PCPPGYPYPPPPPEFYPGPP-----MMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAA 219
Query: 536 EMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSYSFVDKK 685
E +A +A YY+ NPH+VY+ S PP PP Y DKK
Sbjct: 220 EAKAAEAAASAYYNPGNPHNVYMPTSQPPP----------PPYYPPEDKK 259
>sp|P97765|WBP2_MOUSE WW domain-binding protein 2 (WBP-2)
Length = 261
Score = 50.1 bits (118), Expect = 8e-06
Identities = 44/170 (25%), Positives = 62/170 (36%)
Frame = +2
Query: 176 GTMLFSITFKHGGAIEFGEALLEAGRRATRGQPLWNPAENFFSVPVGXXXXXXXXXXXXX 355
G+ + +TF GGAIEFG+ +L+ +A+RG+ + N A + +P G
Sbjct: 106 GSASYKLTFTAGGAIEFGQRMLQVASQASRGE-VPNGAYGYPYMPSGAYVFPPPVANGMY 164
Query: 356 XXXXXXXNFVPQHESFVQPNGTQIYMYGTXXXXXXXXXXXXXXXQNGAVPQPQIPTNYDK 535
P E + P M V P P
Sbjct: 165 PCPPGYPYPPPPPEFYPGPP-----MMDGAMGYVQPPPPPYPGPMEPPVSGPSAPATPAA 219
Query: 536 EMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSYSFVDKK 685
E +A +A YY+ NPH+VY+ S PP PP Y DKK
Sbjct: 220 EAKAAEAAASAYYNPGNPHNVYMPTSQPPP----------PPYYPPEDKK 259
>sp|Q10207|YBX1_SCHPO Hypothetical protein C17D1.01 in chromosome II
Length = 584
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 521 TNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGP-PVYGEGTVPSAPPSYS 670
TN N P S S H ++ A S P PV G G V APP +S
Sbjct: 371 TNQSHSQSQNSLHP--LISQSETHSIFSALSETPTPVSGNGNVADAPPDFS 419
>sp|Q06994|RFAB_SALTY Lipopolysaccharide 1,6-galactosyltransferase
(UDP-D-galactose--(Glucosyl)lipopolysaccharide-alpha-1,
3-D-galactosyltransferase)
Length = 359
Score = 31.6 bits (70), Expect = 2.8
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 788 SHLLSQFTKTKFNLCNASQWKSVIKNADVTLVNYSSCLRTNKKAEQKERCPLHRQVDHLN 609
S++ F + ++ N SQW V ++ SCL NK ++ + H +
Sbjct: 62 SNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKHFTIFSWPHFS 121
Query: 608 WQHKHHADC 582
HK HA+C
Sbjct: 122 LDHKKHAEC 130
>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precursor (Foot protein 1) (MGFP1)
(MGFP-1)
Length = 751
Score = 30.4 bits (67), Expect = 6.3
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 506 QPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSY 667
+P+ PT Y +A + PP Y + + Y A + PP Y PS PP+Y
Sbjct: 412 KPRYPTTY----KAKPSYPPTYKAKPSYPPTYKAKLSYPPTY--KAKPSYPPTY 459
Score = 30.4 bits (67), Expect = 6.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 506 QPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTVPSAPPSY 667
+P P Y +A + PP Y + + Y A S+ PP Y PS PP+Y
Sbjct: 532 KPSYPPTY----KAKPSYPPTYKAKPSYPQTYKAKSSYPPTY--KAKPSYPPTY 579
>sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precursor (Foot protein 1) (MCFP1)
Length = 872
Score = 30.0 bits (66), Expect = 8.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 503 PQPQIPTNY-DKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVY 631
P +IPT Y K+ +P GYY Y + +N PP+Y
Sbjct: 61 PMNKIPTPYISKKSYPAPYKPKGYYPTKRYQPTYGSKTNYPPIY 104
Score = 30.0 bits (66), Expect = 8.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Frame = +2
Query: 503 PQPQIPTNYDKEMEANQAQPPGYYSMSNPHDVYVANSNGPPVYGEGTV--------PSAP 658
P+P PT Y ++ + PP Y S S+ Y + PP Y PS P
Sbjct: 594 PKPSYPTPYKQK----PSYPPIYKSKSSYPTAYKSKKTYPPTYKPKITYPPTYKPKPSYP 649
Query: 659 PSY 667
PSY
Sbjct: 650 PSY 652
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,163,202
Number of Sequences: 369166
Number of extensions: 1915920
Number of successful extensions: 5037
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5020
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)