Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F12
(905 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57421|FLGD_BUCAI Basal-body rod modification protein flgD 31 4.2
sp|P12685|TRK1_YEAST High-affinity potassium transport protein 31 5.4
sp|O14367|GTI1_SCHPO Gluconate transport inducer 1 30 7.1
sp|Q9JXW8|CARB_NEIMB Carbamoyl-phosphate synthase large cha... 30 9.3
sp|Q9JW02|CARB_NEIMA Carbamoyl-phosphate synthase large cha... 30 9.3
sp|O62541|HUNB_DROYA Hunchback protein 30 9.3
sp|Q59599|CARB_NEIGO Carbamoyl-phosphate synthase large cha... 30 9.3
>sp|P57421|FLGD_BUCAI Basal-body rod modification protein flgD
Length = 236
Score = 31.2 bits (69), Expect = 4.2
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +1
Query: 190 TRNISMPGYHIQN-QPPVIGGGIVLPDASQYPMHNSPPPSYQQSMSIGTILGKNQS---- 354
T NI+ ++ N QPP+I V + + P +PP + +S+ KNQ
Sbjct: 3 TININSSDINLPNIQPPIINNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDP 62
Query: 355 IMTGDSSSNQFSLAISNGILNENSSSGFFSDGVDKCD*NQN 477
I D +S + ++G+ N++ FS+ + K NQN
Sbjct: 63 IKNSDLTSQLAQINTASGMQKLNNTVDQFSNQISK---NQN 100
>sp|P12685|TRK1_YEAST High-affinity potassium transport protein
Length = 1235
Score = 30.8 bits (68), Expect = 5.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 271 SQYPMHNSPPPSYQQSMSIGTILGKN-QSIMTGDSSSNQFSLAISNGILNENSSSGFFSD 447
+ YP + +Q+ + G ++ ++ Q + D +S+ S SN N N SSG D
Sbjct: 176 TSYPRKQAKTDDFQEKLFSGEMVNRDEQDSVHSDQNSHDISRDSSNNNTNHNGSSGSLDD 235
Query: 448 GVDKCD*NQN 477
V + + + N
Sbjct: 236 FVKEDETDDN 245
>sp|O14367|GTI1_SCHPO Gluconate transport inducer 1
Length = 720
Score = 30.4 bits (67), Expect = 7.1
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 289 NSPPPSYQQSMSIGTILGKNQSIMTGDSSSNQFSL--AISNGILNEN 423
++ P S +S S+ + + +NQS ++ QFS +ISN LNEN
Sbjct: 390 STSPISGVESSSLSSAISRNQSNLSSFQQQQQFSALQSISNNALNEN 436
>sp|Q9JXW8|CARB_NEIMB Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1071
Score = 30.0 bits (66), Expect = 9.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Frame = -1
Query: 371 ESPVIID*FLPRIVPIDIDC*YDGGGLLCIG----------YCDASGRTMPP 246
+SPV++D FL + +D+DC DG ++ G + SG ++PP
Sbjct: 741 DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPP 792
>sp|Q9JW02|CARB_NEIMA Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1071
Score = 30.0 bits (66), Expect = 9.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Frame = -1
Query: 371 ESPVIID*FLPRIVPIDIDC*YDGGGLLCIG----------YCDASGRTMPP 246
+SPV++D FL + +D+DC DG ++ G + SG ++PP
Sbjct: 741 DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPP 792
>sp|O62541|HUNB_DROYA Hunchback protein
Length = 759
Score = 30.0 bits (66), Expect = 9.3
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 262 PDASQYPM---HNSPPPSYQQSMSIGTILGKNQSIMTGDSSSNQFSLAISNGILNENSSS 432
P A + PM H S S +SM + N S + SSS S A SNG + NSSS
Sbjct: 625 PIAGRKPMPEDHCSGTSSADESMETAHVAQANTSASSTASSSGNSSNASSNGNSSSNSSS 684
>sp|Q59599|CARB_NEIGO Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1071
Score = 30.0 bits (66), Expect = 9.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Frame = -1
Query: 371 ESPVIID*FLPRIVPIDIDC*YDGGGLLCIG----------YCDASGRTMPP 246
+SPV++D FL + +D+DC DG ++ G + SG ++PP
Sbjct: 741 DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPP 792
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,936,154
Number of Sequences: 369166
Number of extensions: 1782935
Number of successful extensions: 4072
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4066
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)