Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F09
(353 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-... 164 8e-41
sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-... 163 1e-40
sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-... 162 2e-40
sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-... 162 3e-40
sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-... 162 3e-40
sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-su... 160 6e-40
sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-... 159 1e-39
sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-... 159 2e-39
sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-... 159 2e-39
sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-... 159 2e-39
>sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 164 bits (414), Expect = 8e-41
Identities = 70/101 (69%), Positives = 86/101 (85%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIRKGPAP NLEVP Y+F++D VVVG
Sbjct: 234 YYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFLSDDMVVVG 274
>sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) [Contains:
Ubiquinol-cytochrome c reductase 8 kDa protein (Complex
III subunit IX)]
Length = 274
Score = 163 bits (412), Expect = 1e-40
Identities = 70/101 (69%), Positives = 85/101 (84%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D ERV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +D V+VG
Sbjct: 234 YYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 274
>sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 162 bits (410), Expect = 2e-40
Identities = 69/101 (68%), Positives = 85/101 (84%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +D V+VG
Sbjct: 234 YYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSDDLVIVG 274
>sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 162 bits (409), Expect = 3e-40
Identities = 70/101 (69%), Positives = 85/101 (84%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +D VVVG
Sbjct: 234 YYCPCHGSHYDASGRIRKGPAPLNLEVPAYEFTSDDVVVVG 274
>sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 162 bits (409), Expect = 3e-40
Identities = 69/101 (68%), Positives = 84/101 (83%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIRKGPAP NLEVP Y+F D V+VG
Sbjct: 234 YYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTGDDMVIVG 274
>sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) (Liver
regeneration-related protein LRRGT00195)
Length = 274
Score = 160 bits (406), Expect = 6e-40
Identities = 70/101 (69%), Positives = 84/101 (83%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D ERV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIRKGPAP NLEVP Y+F + VVVG
Sbjct: 234 YYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSGDVVVVG 274
>sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 159 bits (403), Expect = 1e-39
Identities = 69/101 (68%), Positives = 84/101 (83%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D VVVG
Sbjct: 234 YYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVVVG 274
>sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|P47985|UCRI_HUMAN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 159 bits (402), Expect = 2e-39
Identities = 68/101 (67%), Positives = 84/101 (83%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D V+VG
Sbjct: 234 YYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
>sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 159 bits (402), Expect = 2e-39
Identities = 69/101 (68%), Positives = 82/101 (81%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIR GPAP NLEVP Y+F D VVVG
Sbjct: 234 YYCPCHGSHYDASGRIRLGPAPLNLEVPPYEFTGDDVVVVG 274
>sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|Q69BK6|UCRI_PANPA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 159 bits (402), Expect = 2e-39
Identities = 68/101 (67%), Positives = 84/101 (83%)
Frame = +1
Query: 1 VFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNG 180
+FVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ G
Sbjct: 174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGG 233
Query: 181 YYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 303
YYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D V+VG
Sbjct: 234 YYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,160,997
Number of Sequences: 369166
Number of extensions: 930495
Number of successful extensions: 2658
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2609
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)