Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F04
(811 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing pro... 97 4e-20
sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing pro... 97 4e-20
sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains conta... 86 9e-17
sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finge... 86 1e-16
sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains conta... 83 1e-15
sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains conta... 82 1e-15
sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5) 41 0.003
sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5) 41 0.003
sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5) 40 0.008
sp|Q60769|TNAP3_MOUSE Tumor necrosis factor, alpha-induced ... 34 0.41
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 97.4 bits (241), Expect = 4e-20
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +3
Query: 414 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 593
KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK +A IRK NP +V+ K
Sbjct: 150 KKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEK 209
Query: 594 VAKI 605
+ +I
Sbjct: 210 IQRI 213
Score = 45.8 bits (107), Expect = 1e-04
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 52 MEENNPQQNFSQLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPF 231
M + Q LC GCG++G+ +G+CS CYKE ++ +N+ +++ A+ + P
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 232 DD 237
D
Sbjct: 61 SD 62
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 97.4 bits (241), Expect = 4e-20
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +3
Query: 414 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 593
KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK +A IRK NP +V+ K
Sbjct: 150 KKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEK 209
Query: 594 VAKI 605
+ +I
Sbjct: 210 IQRI 213
Score = 45.8 bits (107), Expect = 1e-04
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 52 MEENNPQQNFSQLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPF 231
M + Q LC GCG++G+ +G+CS CYKE ++ +N+ +++ A+ + P
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 232 DD 237
D
Sbjct: 61 SD 62
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
Length = 161
Score = 86.3 bits (212), Expect = 9e-17
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = +3
Query: 414 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 593
+ NRC +CRK+VGLTGF CRCG FC +HRY + H CTFD+K I KANP +++ K
Sbjct: 98 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAK 157
Query: 594 VAKI 605
+ KI
Sbjct: 158 LQKI 161
Score = 33.1 bits (74), Expect = 0.92
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 85 QLCKMGCGYFGSSNFDGLCSQCY 153
+LC CG+FGSS LCS CY
Sbjct: 14 RLCVNNCGFFGSSATMNLCSNCY 36
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
(Stress-associated protein 1) (OsISAP1)
Length = 164
Score = 85.9 bits (211), Expect = 1e-16
Identities = 38/70 (54%), Positives = 49/70 (70%)
Frame = +3
Query: 393 VASASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKAN 572
VA S+V NRC CRK+VGLTGF CRCG +FC HRYSD H C++DYK A +AI + N
Sbjct: 96 VAKTSAV--NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDN 153
Query: 573 PRIVSNKVAK 602
P + + K+ +
Sbjct: 154 PVVRAAKIVR 163
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
Length = 168
Score = 82.8 bits (203), Expect = 1e-15
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +3
Query: 342 VTGDNNKSDISNSETNSVASASSVKKN--RCQLCRKKVGLTGFACRCGGMFCSAHRYSDS 515
V G + S + ++ A K RC C KKVG+TGF CRCG FC HRY +S
Sbjct: 79 VLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPES 138
Query: 516 HSCTFDYKVDAENAIRKANPRIVSNKVAKI 605
H C FD+K A AI KANP + ++KV +I
Sbjct: 139 HECQFDFKGVAREAIAKANPVVKADKVDRI 168
Score = 38.5 bits (88), Expect = 0.022
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +1
Query: 58 ENNPQQNFS----QLCKMGCGYFGSSNFDGLCSQCYKE 159
E N +FS +LC GCG+FGS + LCS+CY++
Sbjct: 4 EQNDSTSFSPSEPKLCVKGCGFFGSPSNMNLCSKCYRD 41
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
Length = 175
Score = 82.4 bits (202), Expect = 1e-15
Identities = 35/89 (39%), Positives = 53/89 (59%)
Frame = +3
Query: 339 IVTGDNNKSDISNSETNSVASASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSH 518
+VT + + ++ + + S NRC C KKVG+ GF C+CG FC +HRY + H
Sbjct: 87 VVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKH 146
Query: 519 SCTFDYKVDAENAIRKANPRIVSNKVAKI 605
C+FD+K +AI KANP + ++KV +I
Sbjct: 147 ECSFDFKEVGRDAIAKANPLVKADKVQRI 175
Score = 36.6 bits (83), Expect = 0.083
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 55 EENNPQQ---NFSQLCKMGCGYFGSSNFDGLCSQCYK 156
EENN +LC GCG+FGS + LCS+CY+
Sbjct: 4 EENNSTSFPPTEPKLCDNGCGFFGSPSNMNLCSKCYR 40
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 492
Score = 41.2 bits (95), Expect = 0.003
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Frame = +1
Query: 88 LCKMGCGYFGSSNFDGLCSQCYKE-----KEKQFENNHKL 192
LCK GCGY+G+ + G CS+C++E ++KQ + + +L
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWEL 57
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 708
Score = 41.2 bits (95), Expect = 0.003
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Frame = +1
Query: 88 LCKMGCGYFGSSNFDGLCSQCYKE-----KEKQFENNHKL 192
LCK GCGY+G+ + G CS+C++E ++KQ + + +L
Sbjct: 156 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWEL 195
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 491
Score = 40.0 bits (92), Expect = 0.008
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 88 LCKMGCGYFGSSNFDGLCSQCYKEK 162
LCK GCGY+G+ + G CS+C++E+
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREE 42
>sp|Q60769|TNAP3_MOUSE Tumor necrosis factor, alpha-induced protein 3 (Putative DNA
binding protein A20) (Zinc finger protein A20)
Length = 775
Score = 34.3 bits (77), Expect = 0.41
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 24/89 (26%)
Frame = +1
Query: 82 SQLCKMGCGYFGSSNFDGLCSQC---YKEKEK-------------QFENN--------HK 189
S+ K GC YFG+ G C+ C Y+E ++ +F+NN
Sbjct: 590 SKCRKAGCMYFGTPENKGFCTLCFIEYRENKQSVTASAKAGSPAPRFQNNVPCLGRECGT 649
Query: 190 LNNTSFATYNEKPFDDIQESLIHEDIETE 276
L +T F Y +K F + Q HE TE
Sbjct: 650 LGSTMFEGYCQKCFIEAQNQRFHEARRTE 678
Score = 31.6 bits (70), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 58 ENNPQQNFSQLCKM-GCGYFGSSNFDGLCSQCYKEKE 165
E P++ Q C+ C +FG++ +G C++CY+ K+
Sbjct: 736 EPTPEEPPKQRCRAPACDHFGNAKCNGYCNECYQFKQ 772
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,370,248
Number of Sequences: 369166
Number of extensions: 1617473
Number of successful extensions: 4688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4685
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)