Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F02
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39580|DLTB_BACSU Protein dltB 31 3.8
sp|O67303|YC64_AQUAE Hypothetical protein AQ_1264 31 3.8
sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2 31 5.0
sp|Q12473|FRE6_YEAST Ferric reductase transmembrane compone... 31 5.0
sp|P29873|COX2_EXERO Cytochrome c oxidase subunit 2 (Cytoch... 31 5.0
sp|P32303|AG2R_XENLA Type-1-like angiotensin II receptor 1 ... 30 6.5
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein ... 30 8.4
sp|P47274|Y028_MYCGE Hypothetical protein MG028 30 8.4
sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2... 30 8.4
>sp|P39580|DLTB_BACSU Protein dltB
Length = 395
Score = 31.2 bits (69), Expect = 3.8
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 509 YFLYHFVVLHLNTFLEFAENSTEYGKHYKSLADKSRNGLFKRKLEAVVILFYFVCISYLI 688
Y LYH V++ F E ++ K YK L + A+VI F+FVC + I
Sbjct: 337 YGLYHAVLMTCYNFFE------KWNKKYKWLPSNRWTTIL-----AIVITFHFVCFGFYI 385
Query: 689 F 691
F
Sbjct: 386 F 386
>sp|O67303|YC64_AQUAE Hypothetical protein AQ_1264
Length = 306
Score = 31.2 bits (69), Expect = 3.8
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Frame = +2
Query: 245 QKSTTNQLFYLLSVPLFLGTFIYKISETIANDKTDKFSFPMIILEF----LLILGVMILI 412
+K + L + + F+ F Y + ++ N KF +IIL F L +L ++
Sbjct: 60 EKIEISSLLQEVHIFFFINFFAYFVLSSLLNLFPVKFKNSVIILGFSFLTLEVLSNFLIY 119
Query: 413 INVNFANNDDIPF--YQSLFRNFVLYISTIGML------NY-FLYHFVVLH-----LNTF 550
NF I F +Q +F +++ S G++ +Y FL +V+ L TF
Sbjct: 120 FTENFITLKLILFLLFQVIFFTTLIF-SVYGLIYEKEKTDYDFLKTLIVIFAIFSILFTF 178
Query: 551 LEFAENSTEYGKHYKSLAD------------KSRNGLFKRKLEAVVIL--FYFVCISYLI 688
L F + G Y + D K+ GL K ++ + FYF +L+
Sbjct: 179 LNFFLFKEKLGLFYSDIRDYYLGNPEKFARPKTFEGLIKVFHPHLISITAFYFALAHFLL 238
Query: 689 FLKLKNK 709
F+ LK K
Sbjct: 239 FIPLKYK 245
>sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2
Length = 380
Score = 30.8 bits (68), Expect = 5.0
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 503 LNYFLYHFVVLH-LNTFLEFAENSTEYGKHYKSLADKSRNGLF 628
+N+F H ++H + TF ++ N+T+Y HY L ++ L+
Sbjct: 238 MNFFQQHIRLIHFIGTFKPWSRNTTDYDDHYYQLWRSTQRELY 280
>sp|Q12473|FRE6_YEAST Ferric reductase transmembrane component 6 precursor
(Ferric-chelate reductase 6)
Length = 712
Score = 30.8 bits (68), Expect = 5.0
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = +2
Query: 380 FLLILGVMILIINVNFANNDDIPFYQSLFRNFVLYISTIGMLNYFLYHFVVLHLNTFLEF 559
+ +I+G++ + +++ N + + S F +NY HFV L TFL
Sbjct: 177 YFVIVGIIAVFFHMSHYNGLNRALFASRF------------VNYIRGHFV---LPTFLV- 220
Query: 560 AENSTEYGKHYKSLADKSRNGLFKRKLEAVVILFY------FVCISYLI 688
++ H+K L + GL LEA +I Y F+ ISY+I
Sbjct: 221 ----DKHANHFKFLNVEVFTGLMPNSLEAWIIFGYTLANIIFLSISYII 265
>sp|P29873|COX2_EXERO Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 224
Score = 30.8 bits (68), Expect = 5.0
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Frame = +2
Query: 275 LLSVPLFLGTFIYKISETIANDKTDKFSF------------PMIILEFLLILGVMILIIN 418
L+ + L T IY IS I N+ T+KF PMIIL ++ I + IL +
Sbjct: 28 LMILLLITITIIYIISSIIMNNLTNKFIMQNQTIEIIWTIIPMIILIYMAIPSLKILYL- 86
Query: 419 VNFANNDDIPFYQSLFRNFVLYISTIGMLNYFLYH---FVVLHLNTFLEFAENSTEY 580
ND+I N ++ I +IG Y+ Y F + N+F+ ++N +
Sbjct: 87 -----NDEI-------NNPLMTIKSIGHQWYWSYEYSDFKNIDFNSFMINSKNLNHF 131
>sp|P32303|AG2R_XENLA Type-1-like angiotensin II receptor 1 (AT1)
Length = 362
Score = 30.4 bits (67), Expect = 6.5
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 500 MLNYFLYHFVVLHLNTFLEFAENSTEYGKHYKSL--ADKSRNGLFKRKLEAVVILFYFVC 673
M+ L +V L FL + T GK K + A ++RN + + AVV+LF+F
Sbjct: 193 MVGMSLAKNIVGFLIPFLIILTSYTLIGKTLKEVYRAQRARNDDIFKMIVAVVLLFFFCW 252
Query: 674 ISYLIF 691
I Y +F
Sbjct: 253 IPYQVF 258
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
Length = 519
Score = 30.0 bits (66), Expect = 8.4
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = -3
Query: 680 KKYIQNKIISQQLLIYV*ISRFYFYQLKTYNVFRILWNFLQILRTY-------LNVKQRN 522
K +IQ K IYV + ++ K+YN F I N+L Y +N +N
Sbjct: 230 KSFIQRKCFMNNEFIYVSSLKNIYFFFKSYNEFNICINYLIYFLKYKGINFNFINDHVKN 289
Query: 521 DIENNSTF 498
+ N TF
Sbjct: 290 FLTNGLTF 297
>sp|P47274|Y028_MYCGE Hypothetical protein MG028
Length = 201
Score = 30.0 bits (66), Expect = 8.4
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Frame = +2
Query: 239 ESQKSTTNQLFYLLSVPLFLGTFI------YKISETIANDKTDKFSFPM---------II 373
+S +TT Q +L P FLG I + + + + KF F +I
Sbjct: 31 QSLNNTTPQFRFLFVTP-FLGVVIGAVLYFFDVKWFLIDYPYKKFHFQKKWAIVYLSGVI 89
Query: 374 LEFL-LILGVMILIINVNFANNDDIP-FYQSLFRNFVLYI-STIG 499
+ FL +++GV++L++ VN+ N + Y+ LF N + Y+ ST G
Sbjct: 90 VFFLNVLIGVVLLVVMVNYITNQILEREYERLFTNSLPYLWSTTG 134
>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 333
Score = 30.0 bits (66), Expect = 8.4
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 17/173 (9%)
Frame = +2
Query: 239 ESQKSTTNQLFYLLSV--PLFLGTFIYKISETIANDKTDKFSFPMIILEFLLILGV---- 400
+S T + ++Y +SV +FL I +I+ KTD F+F M+ + F L +G
Sbjct: 49 KSTNKTPSLIYYSVSVISSIFLFFMIIVYLSSISFTKTDTFNF-MVQMMFFLKIGTFPFH 107
Query: 401 MILIINVNFANNDDIPFYQSLFRNFVLYIS-TIGMLNYFLYHFVVLHLNTFLEFAENSTE 577
+I + N I +L + +Y+ ++ +N + +F++ + + ++ F N
Sbjct: 108 FWMIYSYEMMNWKQIFLMSTLIKFIPIYMMVSMTKINSWTLYFLITN-SLYISFYANKFY 166
Query: 578 YGKHYKSLADKSRNGLF-------KRKLEAVVILF---YFVCISYLIFLKLKN 706
K + + + F K A++IL+ YF+ IS+L ++N
Sbjct: 167 TLKKLLACSTIFNSFYFIFILELNKNMFIAMIILYSFNYFLLISFLNKFNIQN 219
Score = 30.0 bits (66), Expect = 8.4
Identities = 37/187 (19%), Positives = 80/187 (42%), Gaps = 12/187 (6%)
Frame = +2
Query: 266 LFYLLSVPLFLGTF---IYKISETIANDKTDKFSFPMIILEF-------LLILGVMILII 415
L++L++ L++ + Y + + +A + + ILE ++IL +
Sbjct: 148 LYFLITNSLYISFYANKFYTLKKLLACSTIFNSFYFIFILELNKNMFIAMIILYSFNYFL 207
Query: 416 NVNFANNDDIPFYQSLFRN-FVLYISTIGMLNYFLYHFVVLHLNTFLEFAENSTEYGKHY 592
++F N +I + +F N + +Y M NY +Y FL F ++ +
Sbjct: 208 LISFLNKFNIQNFNFMFYNKYQMYTFLTLMFNYSMYPI-------FLSFV---IKWNLIF 257
Query: 593 KSLADKSRNG-LFKRKLEAVVILFYFVCISYLIFLKLKNKINTFTIERTISSKQENRFNR 769
++ K+ N LF + ++++++ ++ I +FLK+ N F ++ + F
Sbjct: 258 MMVSVKAYNWILFLLMISSMLMIWNYIIILKRVFLKMNFYKNNFIDDKDNKYMYHSYFAL 317
Query: 770 NPFSFRI 790
SF I
Sbjct: 318 TLLSFNI 324
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,715,990
Number of Sequences: 369166
Number of extensions: 1450835
Number of successful extensions: 4445
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4441
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)