Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E19-2
(406 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5GH72|XKR7_HUMAN XK-related protein 7 28 7.0
sp|Q49LS1|XKR7_PANTR XK-related protein 7 28 7.0
sp|Q5GH64|XKR7_MOUSE XK-related protein 7 28 7.0
sp|Q5GH56|XKR7_RAT XK-related protein 7 28 7.0
>sp|Q5GH72|XKR7_HUMAN XK-related protein 7
Length = 579
Score = 28.1 bits (61), Expect = 7.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 103 FWHNSRNISFDY*LFLVICLINKS 32
FW++SRN S D+ +++C++ S
Sbjct: 401 FWYSSRNFSTDFYSLIMVCVVASS 424
>sp|Q49LS1|XKR7_PANTR XK-related protein 7
Length = 579
Score = 28.1 bits (61), Expect = 7.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 103 FWHNSRNISFDY*LFLVICLINKS 32
FW++SRN S D+ +++C++ S
Sbjct: 401 FWYSSRNFSTDFYSLIMVCVVASS 424
>sp|Q5GH64|XKR7_MOUSE XK-related protein 7
Length = 580
Score = 28.1 bits (61), Expect = 7.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 103 FWHNSRNISFDY*LFLVICLINKS 32
FW++SRN S D+ +++C++ S
Sbjct: 401 FWYSSRNFSTDFYSLILVCVVASS 424
>sp|Q5GH56|XKR7_RAT XK-related protein 7
Length = 580
Score = 28.1 bits (61), Expect = 7.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 103 FWHNSRNISFDY*LFLVICLINKS 32
FW++SRN S D+ +++C++ S
Sbjct: 401 FWYSSRNFSTDFYSLILVCVVASS 424
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,303,303
Number of Sequences: 369166
Number of extensions: 469833
Number of successful extensions: 1099
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)