Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E19-1
(392 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60868|RS20_RAT 40S ribosomal protein S20 >gi|46397704|s... 144 8e-35
sp|P23403|RS20_XENLA 40S ribosomal protein S20 (S22) 143 1e-34
sp|P55828|RS20_DROME 40S ribosomal protein S20 139 3e-33
sp|P49200|RS20_ARATH 40S ribosomal protein S20 136 1e-32
sp|P35686|RS20_ORYSA 40S ribosomal protein S20 135 3e-32
sp|O74893|RS20_SCHPO 40S ribosomal protein S20 133 1e-31
sp|P38701|RS20_YEAST 40S ribosomal protein S20 117 8e-27
sp|Q08068|RS20_MAIZE 40S ribosomal protein S20 (S22) 90 1e-18
sp|Q5JFZ5|RS10_PYRKO 30S ribosomal protein S10P 80 1e-15
sp|Q9YAV2|RS10_AERPE 30S ribosomal protein S10P 79 3e-15
>sp|P60868|RS20_RAT 40S ribosomal protein S20
sp|P60867|RS20_MOUSE 40S ribosomal protein S20
sp|P60866|RS20_HUMAN 40S ribosomal protein S20
Length = 119
Score = 144 bits (362), Expect = 8e-35
Identities = 70/116 (60%), Positives = 89/116 (76%)
Frame = -3
Query: 387 FKRMSDKKVEEVSQVDRIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLK 208
FK VE + RIRITLTS+ +K LEKV +DL+ AK+KN+KV+GPVR+PT+ L+
Sbjct: 3 FKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLR 62
Query: 207 ITTRKTPCGEGSKTWDRLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVTASE 40
ITTRKTPCGEGSKTWDR QMRIHKR++DL +IV++I SI+IEP V EVT ++
Sbjct: 63 ITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
>sp|P23403|RS20_XENLA 40S ribosomal protein S20 (S22)
Length = 119
Score = 143 bits (361), Expect = 1e-34
Identities = 69/116 (59%), Positives = 90/116 (77%)
Frame = -3
Query: 387 FKRMSDKKVEEVSQVDRIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLK 208
FK V++ + RIRITLTS+ +K LEKV +DL+ AK+KN+KV+GPVR+PT+ L+
Sbjct: 3 FKDPGKAPVDQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLR 62
Query: 207 ITTRKTPCGEGSKTWDRLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVTASE 40
ITTRKTPCGEGSKTWDR QMRIHKR++DL +IV++I SI+IEP V EVT ++
Sbjct: 63 ITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
>sp|P55828|RS20_DROME 40S ribosomal protein S20
Length = 120
Score = 139 bits (349), Expect = 3e-33
Identities = 67/112 (59%), Positives = 85/112 (75%)
Frame = -3
Query: 384 KRMSDKKVEEVSQVDRIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLKI 205
K + V + + V RIRITLTS+ ++ LE V DL+N AK +N++V+GPVR+PT+ L+I
Sbjct: 6 KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65
Query: 204 TTRKTPCGEGSKTWDRLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVT 49
TTRKTPCGEGSKTWDR QMRIHKR++DL +IV+KI SI IEP V EVT
Sbjct: 66 TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVT 117
>sp|P49200|RS20_ARATH 40S ribosomal protein S20
Length = 124
Score = 136 bits (343), Expect = 1e-32
Identities = 63/107 (58%), Positives = 85/107 (79%)
Frame = -3
Query: 360 EEVSQVDRIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLKITTRKTPCG 181
E + Q+ +IRITL+SK +K LEKV +DLV AK K ++V+GPVR+PT+ LKITTRK PCG
Sbjct: 17 EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCG 76
Query: 180 EGSKTWDRLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVTASE 40
EG+ TWDR ++R+HKRV+DL + D+V++I SITIEP V EVT ++
Sbjct: 77 EGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123
>sp|P35686|RS20_ORYSA 40S ribosomal protein S20
Length = 117
Score = 135 bits (340), Expect = 3e-32
Identities = 64/100 (64%), Positives = 81/100 (81%)
Frame = -3
Query: 339 RIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLKITTRKTPCGEGSKTWD 160
RIRITL+SK +K LEKV DLV AK K++KV+GPVR+PT+ L ITTRK+PCGEG+ TWD
Sbjct: 17 RIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWD 76
Query: 159 RLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVTASE 40
R +MR+HKRV+DL + D+V++I SITIEP V EVT S+
Sbjct: 77 RFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 116
>sp|O74893|RS20_SCHPO 40S ribosomal protein S20
Length = 118
Score = 133 bits (335), Expect = 1e-31
Identities = 67/112 (59%), Positives = 88/112 (78%), Gaps = 1/112 (0%)
Frame = -3
Query: 372 DKKVEEV-SQVDRIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLKITTR 196
D+K +++ S V RIRITLTS+ ++ LEKV SDLVN AK K ++V+GPVR+PT+ LKITTR
Sbjct: 7 DQKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTR 66
Query: 195 KTPCGEGSKTWDRLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVTASE 40
KTP GEGSKTW+ +MRIHKR++DL +IV++I SI IEP V EVT ++
Sbjct: 67 KTPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIAQ 118
>sp|P38701|RS20_YEAST 40S ribosomal protein S20
Length = 121
Score = 117 bits (293), Expect = 8e-27
Identities = 58/114 (50%), Positives = 81/114 (71%)
Frame = -3
Query: 384 KRMSDKKVEEVSQVDRIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLKI 205
K +++ ++ Q+ +IRITLTS ++K LE V S++V A+Q N+ +GPVR+PT+ LKI
Sbjct: 6 KEKVEEQEQQQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKI 65
Query: 204 TTRKTPCGEGSKTWDRLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVTAS 43
+TRKTP GEGSKTW+ +MRIHKR +DL IV++I ITIEP V EV +
Sbjct: 66 STRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVA 119
>sp|Q08068|RS20_MAIZE 40S ribosomal protein S20 (S22)
Length = 60
Score = 90.1 bits (222), Expect = 1e-18
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = -3
Query: 297 EKVVSDLVNLAKQKNIKVRGPVRIPTRCLKITTRKTPCGEGSKTWDRLQMRIHKRVLDL 121
EKV +DLV AK K+++V+GPVRIPT+ L ITTRK+PCGEG+ TWDR + RIHKRV+DL
Sbjct: 1 EKVCADLVKGAKDKHLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDL 59
>sp|Q5JFZ5|RS10_PYRKO 30S ribosomal protein S10P
Length = 102
Score = 80.1 bits (196), Expect = 1e-15
Identities = 35/98 (35%), Positives = 64/98 (65%)
Frame = -3
Query: 345 VDRIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLKITTRKTPCGEGSKT 166
+ + RI L S IK L +V + +A++ +++ GP+ +PT+ ++ITTRK+P GEGS T
Sbjct: 1 MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSAT 60
Query: 165 WDRLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEV 52
+DR ++R+HKR++D+ + +++I I + V E+
Sbjct: 61 FDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEI 98
>sp|Q9YAV2|RS10_AERPE 30S ribosomal protein S10P
Length = 104
Score = 79.3 bits (194), Expect = 3e-15
Identities = 35/101 (34%), Positives = 62/101 (61%)
Frame = -3
Query: 339 RIRITLTSKEIKPLEKVVSDLVNLAKQKNIKVRGPVRIPTRCLKITTRKTPCGEGSKTWD 160
++RI L S ++ LE VV + N+A + I++RGPV +P + L++ + P GEGSK W+
Sbjct: 4 KLRIWLWSTNVRSLENVVEQIRNIANKTGIRMRGPVPLPVKRLEVPVFRLPHGEGSKYWE 63
Query: 159 RLQMRIHKRVLDLTGAKDIVQKINSITIEPSVYFEVTASEG 37
+M++HKR++DL + +++ + I + VY E+ G
Sbjct: 64 HWEMKVHKRLIDLEADERVLRHLMRIKVPEDVYIEIKQMTG 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,024,417
Number of Sequences: 369166
Number of extensions: 613014
Number of successful extensions: 1948
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)