Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E17
(409 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mi... 77 1e-14
sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial precu... 75 4e-14
sp|Q9UII2|ATIF1_HUMAN ATPase inhibitor, mitochondrial precu... 75 5e-14
sp|Q03344|ATIF1_RAT ATPase inhibitor, mitochondrial precursor 74 1e-13
sp|O35143|ATIF1_MOUSE ATPase inhibitor, mitochondrial precu... 71 7e-13
sp|Q29307|ATIF1_PIG ATPase inhibitor, mitochondrial precursor 68 6e-12
sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog 65 4e-11
sp|P35579|MYH9_HUMAN Myosin-9 (Myosin heavy chain, nonmuscl... 38 0.009
sp|P35580|MYH10_HUMAN Myosin-10 (Myosin heavy chain, nonmus... 37 0.015
sp|Q61879|MYH10_MOUSE Myosin-10 (Myosin heavy chain, nonmus... 36 0.034
>sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mitochondrial precursor
Length = 109
Score = 77.0 bits (188), Expect = 1e-14
Identities = 30/65 (46%), Positives = 52/65 (80%)
Frame = +1
Query: 97 AIRDAGGSFGKREAAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEIERHSEAIERHKSR 276
+IRDAGG+FGK EAA+E++YF K ++ Q+ +++ +QEE+K+H+ ++E H + +ERH+ R
Sbjct: 36 SIRDAGGAFGKMEAAREDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERHQQR 95
Query: 277 IKELK 291
I E++
Sbjct: 96 ISEIE 100
>sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial precursor
Length = 109
Score = 75.5 bits (184), Expect = 4e-14
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +1
Query: 97 AIRDAGGSFGKREAAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEIERHSEAIERHKSR 276
A+RDAGG+FGKRE A+EE+YF+ +EQ+ +KK + E+ +H EIER + IERHK
Sbjct: 39 AVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHHENEISHHAKEIERLQKEIERHKQS 98
Query: 277 IKELKDA 297
IK+LK +
Sbjct: 99 IKKLKQS 105
>sp|Q9UII2|ATIF1_HUMAN ATPase inhibitor, mitochondrial precursor
sp|Q5RFJ9|ATIF1_PONPY ATPase inhibitor, mitochondrial precursor
Length = 106
Score = 75.1 bits (183), Expect = 5e-14
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +1
Query: 97 AIRDAGGSFGKREAAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEIERHSEAIERHKSR 276
+IR+AGG+FGKRE A+EE+YF+ +EQ+ +KK +EE+ +H+ EIER + IERHK +
Sbjct: 39 SIREAGGAFGKREQAEEERYFRAQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQK 98
Query: 277 IKELK 291
IK LK
Sbjct: 99 IKMLK 103
>sp|Q03344|ATIF1_RAT ATPase inhibitor, mitochondrial precursor
Length = 107
Score = 73.9 bits (180), Expect = 1e-13
Identities = 33/67 (49%), Positives = 52/67 (77%)
Frame = +1
Query: 97 AIRDAGGSFGKREAAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEIERHSEAIERHKSR 276
+IR+AGG+FGKRE A+E++YF++ +EQ+ +KK ++E+ +H EIER + IERHK +
Sbjct: 39 SIREAGGAFGKREKAEEDRYFREKTREQLAALKKHHEDEIDHHSKEIERLQKQIERHKKK 98
Query: 277 IKELKDA 297
IK LK++
Sbjct: 99 IKYLKNS 105
>sp|O35143|ATIF1_MOUSE ATPase inhibitor, mitochondrial precursor
Length = 106
Score = 71.2 bits (173), Expect = 7e-13
Identities = 30/66 (45%), Positives = 52/66 (78%)
Frame = +1
Query: 97 AIRDAGGSFGKREAAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEIERHSEAIERHKSR 276
+IR+AGG+FGKRE A+E++YF++ +EQ+ ++K ++E+ +H EIER + I+RHK +
Sbjct: 39 SIREAGGAFGKREKAEEDRYFREKTKEQLAALRKHHEDEIDHHSKEIERLQKQIDRHKKK 98
Query: 277 IKELKD 294
I++LK+
Sbjct: 99 IQQLKN 104
>sp|Q29307|ATIF1_PIG ATPase inhibitor, mitochondrial precursor
Length = 108
Score = 68.2 bits (165), Expect = 6e-12
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = +1
Query: 97 AIRDAGGSFGKREAAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEIERHSEAIERHKSR 276
A+R AGG+FGK+E A EE+YF+ +EQ+ +KK + + +H EIER + IERHK
Sbjct: 39 AVRXAGGAFGKKEQADEERYFRARAREQLAALKKHHENXISHHVKEIERLQKEIERHKQS 98
Query: 277 IKELKD 294
IK+LK+
Sbjct: 99 IKKLKN 104
>sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog
Length = 88
Score = 65.5 bits (158), Expect = 4e-11
Identities = 26/65 (40%), Positives = 48/65 (73%)
Frame = +1
Query: 97 AIRDAGGSFGKREAAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEIERHSEAIERHKSR 276
+IR+AGGS G A +EE+YF++ +++Q++N+KK L+ ++ Q EI H + +E+H+ R
Sbjct: 19 SIREAGGSLGMMGATREEEYFRRQQKDQLDNLKKKLEADMTQSQQEIRDHEKVLEQHQQR 78
Query: 277 IKELK 291
+KE++
Sbjct: 79 LKEIE 83
>sp|P35579|MYH9_HUMAN Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1960
Score = 37.7 bits (86), Expect = 0.009
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Frame = +1
Query: 136 AAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEI----ERHSEAIERHKSRIKELK 291
AAQ+E K+ +++VN +KK L+EE K H+ +I ++HS+A+E ++++ K
Sbjct: 1156 AAQQELRSKR--EQEVNILKKTLEEEAKTHEAQIQEMRQKHSQAVEELAEQLEQTK 1209
>sp|P35580|MYH10_HUMAN Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 37.0 bits (84), Expect = 0.015
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Frame = +1
Query: 136 AAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEI----ERHSEAIERHKSRIKELK 291
AAQ+E K+ +++V +KK L+EE KNH+ +I +RH+ A+E ++++ K
Sbjct: 1163 AAQQELRTKR--EQEVAELKKALEEETKNHEAQIQDMRQRHATALEELSEQLEQAK 1216
>sp|Q61879|MYH10_MOUSE Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 35.8 bits (81), Expect = 0.034
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Frame = +1
Query: 136 AAQEEQYFKKLEQEQVNNMKKFLQEELKNHQNEI----ERHSEAIERHKSRIKELK 291
AAQ+E K+ +++V +KK L++E KNH+ +I +RH+ A+E ++++ K
Sbjct: 1163 AAQQELRTKR--EQEVAELKKALEDETKNHEAQIQDMRQRHATALEELSEQLEQAK 1216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,832,689
Number of Sequences: 369166
Number of extensions: 585806
Number of successful extensions: 3226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3180
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)