Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E16
(595 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 102 9e-22
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 99 8e-21
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 93 4e-19
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 93 6e-19
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 92 7e-19
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 92 7e-19
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 91 2e-18
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 91 3e-18
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 90 4e-18
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 90 4e-18
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 102 bits (253), Expect = 9e-22
Identities = 47/97 (48%), Positives = 65/97 (67%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNC+VFDHA P P K+ + + + S+++GPTCDG D + ++ L
Sbjct: 317 DGVYGSFNCLVFDHAHPKPI-------LHKKPSPDQPLYTSSLWGPTCDGLDQIAERVQL 369
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P++ VG+W+++ NMGAYTIAASS FNG + VHY M
Sbjct: 370 PELHVGDWLLFENMGAYTIAASSNFNGFQQSPVHYAM 406
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 99.0 bits (245), Expect = 8e-21
Identities = 46/100 (46%), Positives = 64/100 (64%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI+FDHA P +FD + E F+STI+GPTCD D + ++ +
Sbjct: 320 DGVYGSFNCILFDHAHPIGSPLFDTD--------RNEKFMSTIWGPTCDSLDLVEDKKLM 371
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFMYQD 300
PKM+VG W+ +P+MGAYT+AA++ FNG Y M ++
Sbjct: 372 PKMNVGEWLYYPDMGAYTLAAATTFNGFSKPVPMYVMSEE 411
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 93.2 bits (230), Expect = 4e-19
Identities = 43/97 (44%), Positives = 64/97 (65%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI+FDHA P K+ + + + S+I+GPTCDG D ++++ L
Sbjct: 321 DGVYGSFNCILFDHAHVKPV-------LTKKPKPDEKFYSSSIWGPTCDGLDRIVERFEL 373
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P++ VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 374 PELQVGDWMLFENMGAYTVAAASTFNGFQRPTLYYVM 410
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 92.8 bits (229), Expect = 6e-19
Identities = 43/97 (44%), Positives = 63/97 (64%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI++DHA P K + + + S+I+GPTCDG D ++++ L
Sbjct: 320 DGVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDL 372
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 373 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 92.4 bits (228), Expect = 7e-19
Identities = 43/97 (44%), Positives = 63/97 (64%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI++DHA P K + + + S+I+GPTCDG D ++++ L
Sbjct: 320 DGVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNL 372
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 373 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 92.4 bits (228), Expect = 7e-19
Identities = 43/97 (44%), Positives = 63/97 (64%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI++DHA P K + + + S+I+GPTCDG D ++++ L
Sbjct: 314 DGVYGSFNCILYDHAHVKPL-------LPKRPKPDEKYYSSSIWGPTCDGLDRIVERCNL 366
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 367 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPSIYYVM 403
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 91.3 bits (225), Expect = 2e-18
Identities = 42/97 (43%), Positives = 61/97 (62%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI++DHA P K + + +I+GPTCDG D ++++ +
Sbjct: 310 DGVYGSFNCILYDHAHVKPV-------LQKRPKPDDGCYSCSIWGPTCDGLDRIVERCNM 362
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P++ VG+WI++ NMGAYT+AA+S FNG +HY M
Sbjct: 363 PELQVGDWILFENMGAYTVAAASTFNGFQRPTIHYVM 399
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 90.5 bits (223), Expect = 3e-18
Identities = 42/97 (43%), Positives = 63/97 (64%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI++DHA K + + + S+I+GPTCDG D ++++ L
Sbjct: 320 DGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCSL 372
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 373 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 90.1 bits (222), Expect = 4e-18
Identities = 42/97 (43%), Positives = 63/97 (64%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI++DHA K + + + S+I+GPTCDG D ++++ L
Sbjct: 320 DGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNL 372
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 373 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 90.1 bits (222), Expect = 4e-18
Identities = 42/97 (43%), Positives = 63/97 (64%)
Frame = +1
Query: 1 DGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPL 180
DGVY SFNCI++DHA K + + + S+I+GPTCDG D ++++ L
Sbjct: 320 DGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNL 372
Query: 181 PKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 291
P+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 373 PEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,938,069
Number of Sequences: 369166
Number of extensions: 1436945
Number of successful extensions: 2711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2681
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)