Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E09
(743 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 271 2e-72
sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A >gi|465776... 270 4e-72
sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A 269 7e-72
sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A 267 3e-71
sp|P05712|RAB2A_RAT Ras-related protein Rab-2A 266 3e-71
sp|Q8WUD1|RAB2B_HUMAN Ras-related protein Rab-2B 262 8e-70
sp|P59279|RAB2B_MOUSE Ras-related protein Rab-2B 254 2e-67
sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B 230 3e-60
sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A 226 4e-59
sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 (RAB2 homolog) 220 4e-57
>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2
Length = 212
Score = 271 bits (692), Expect = 2e-72
Identities = 130/156 (83%), Positives = 145/156 (92%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTTWLEDARQHS+SNMVIM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNKSDLEARR+VK+EEGEAFAREHGL+FMETSAKTAANVEEAFINTAK IY+KIQ+GV
Sbjct: 116 LIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGV 175
Query: 364 LDINNEANGIKLGPQHTPSGSTAGLGSNRSSNGGCC 471
DINNEANGIK+GPQH+P+ + +G + + GG C
Sbjct: 176 FDINNEANGIKIGPQHSPASQSLNVGGSGGNQGGNC 211
>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A
sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A
Length = 212
Score = 270 bits (689), Expect = 4e-72
Identities = 132/157 (84%), Positives = 145/157 (92%), Gaps = 1/157 (0%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTTWLEDARQHS+SNMVIM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNKSDLE+RR+VK+EEGEAFAREHGL+FMETSAKTA+NVEEAFINTAK IYEKIQEGV
Sbjct: 116 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175
Query: 364 LDINNEANGIKLGPQHTPSGST-AGLGSNRSSNGGCC 471
DINNEANGIK+GPQH + +T AG + + GGCC
Sbjct: 176 FDINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC 212
>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A
Length = 212
Score = 269 bits (687), Expect = 7e-72
Identities = 132/157 (84%), Positives = 145/157 (92%), Gaps = 1/157 (0%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTTWLEDARQHS+SNMVIM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNKSDLE+RR+VK+EEGEAFAREHGL+FMETSAKTA+NVEEAFINTAK IYEKIQEGV
Sbjct: 116 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175
Query: 364 LDINNEANGIKLGPQHTPSGST-AGLGSNRSSNGGCC 471
DINNEANGIK+GPQH + +T AG + + GGCC
Sbjct: 176 FDINNEANGIKIGPQHGATNATHAGNQGGQQAGGGCC 212
>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A
Length = 212
Score = 267 bits (682), Expect = 3e-71
Identities = 130/157 (82%), Positives = 144/157 (91%), Gaps = 1/157 (0%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTTWLEDARQHS+SNMVIM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNKSDLE+RR+VK+EEGEAFAREHGL+FMETSAKTA+NVEEAFINTAK IYEKIQEGV
Sbjct: 116 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175
Query: 364 LDINNEANGIKLGPQHTPSGSTAGLG-SNRSSNGGCC 471
DINNEANGIK+GPQH + ++ G + + GGCC
Sbjct: 176 FDINNEANGIKIGPQHAATNASHGSNQGGQQAGGGCC 212
>sp|P05712|RAB2A_RAT Ras-related protein Rab-2A
Length = 212
Score = 266 bits (681), Expect = 3e-71
Identities = 131/157 (83%), Positives = 143/157 (91%), Gaps = 1/157 (0%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTTWLEDARQHS+SNMVIM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNKSDLE+RR+VK+EEGEAFAREHGL+FMETSAKTA+NVEEAFINTAK IYEKIQEGV
Sbjct: 116 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGV 175
Query: 364 LDINNEANGIKLGPQH-TPSGSTAGLGSNRSSNGGCC 471
DINNEANGIK+GPQH + S G + + GGCC
Sbjct: 176 FDINNEANGIKIGPQHAATNASHGGNQGGQQAGGGCC 212
>sp|Q8WUD1|RAB2B_HUMAN Ras-related protein Rab-2B
Length = 216
Score = 262 bits (669), Expect = 8e-70
Identities = 131/161 (81%), Positives = 142/161 (88%), Gaps = 5/161 (3%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT+WLEDARQHSSSNMVIM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNKSDLE+RRDVKREEGEAFAREHGL+FMETSAKTA NVEEAFINTAK IY KIQ+G+
Sbjct: 116 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 175
Query: 364 LDINNEANGIKLGPQHTPSGSTAGLGSNRS-----SNGGCC 471
D++NEANGIK+GPQ + S S S R+ SN GCC
Sbjct: 176 FDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216
>sp|P59279|RAB2B_MOUSE Ras-related protein Rab-2B
Length = 216
Score = 254 bits (648), Expect = 2e-67
Identities = 126/161 (78%), Positives = 140/161 (86%), Gaps = 5/161 (3%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT+WLEDARQHSSSNMVIM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNKSDLE+RRDVKREEGEAFAREHGL+FMETSAKTA NVEEA+INTAK IY KIQ+G+
Sbjct: 116 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGL 175
Query: 364 LDINNEANGIKLGPQHTPSGSTAGLG-----SNRSSNGGCC 471
D++NEANGIK+GPQ + + S S+ + GCC
Sbjct: 176 FDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216
>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B
Length = 210
Score = 230 bits (587), Expect = 3e-60
Identities = 112/156 (71%), Positives = 130/156 (83%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL +WLEDARQH+++NM IM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
L+GNK DL RR V EEGE FA+EHGL+FME SAKTA NVEEAF+ TA AIY+KIQ+GV
Sbjct: 116 LVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGV 175
Query: 364 LDINNEANGIKLGPQHTPSGSTAGLGSNRSSNGGCC 471
D++NE+ GIK+G + G + G GS+ S GGCC
Sbjct: 176 FDVSNESYGIKVG--YAIPGQSGGAGSSSSQGGGCC 209
>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A
Length = 209
Score = 226 bits (577), Expect = 4e-59
Identities = 112/156 (71%), Positives = 130/156 (83%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL +WLEDARQH+++NM IM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
L+GNK DL RR V EEGE FA+EHGL+FME SAKTA NVEEAF+ TA AIY+KIQ+GV
Sbjct: 116 LVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGV 175
Query: 364 LDINNEANGIKLGPQHTPSGSTAGLGSNRSSNGGCC 471
D++NE+ GIK+G + G + G GS+ S GGCC
Sbjct: 176 FDVSNESYGIKVG--YVVPGQSGGAGSS-SQGGGCC 208
>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 (RAB2 homolog)
Length = 213
Score = 220 bits (560), Expect = 4e-57
Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 3/158 (1%)
Frame = +1
Query: 4 QLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSSSNMVIM 183
+LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL +WLEDARQH++ NM IM
Sbjct: 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIM 115
Query: 184 LIGNKSDLEARRDVKREEGEAFAREHGLVFMETSAKTAANVEEAFINTAKAIYEKIQEGV 363
LIGNK DL RR V EEGE FA+EHGL+F+ETSA+TA NVEEAFINTAK IY+KIQ+GV
Sbjct: 116 LIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGV 175
Query: 364 LDINNEANGIKLG---PQHTPSGSTAGLGSNRSSNGGC 468
D++NE+ GIK+G P + G G R S+ C
Sbjct: 176 FDVSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,068,048
Number of Sequences: 369166
Number of extensions: 1208821
Number of successful extensions: 3837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3667
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)