Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E07
(521 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 192 3e-49
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 190 2e-48
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 189 5e-48
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 188 6e-48
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 188 6e-48
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 188 6e-48
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 187 1e-47
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 186 4e-47
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 183 2e-46
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 181 7e-46
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 192 bits (489), Expect = 3e-49
Identities = 106/142 (74%), Positives = 113/142 (79%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
FGVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 14 FGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73
Query: 181 VLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMIL 360
VLIA + T+ +S IGIVGDAGVRGTAQQPRLFVGMIL
Sbjct: 74 VLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 133
Query: 361 ILIFAEVLGLYGLIVALILSTK 426
ILIFAEVLGLYGLIVALILSTK
Sbjct: 134 ILIFAEVLGLYGLIVALILSTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 190 bits (483), Expect = 2e-48
Identities = 105/142 (73%), Positives = 114/142 (80%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
FGV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 13 FGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 72
Query: 181 VLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMIL 360
VLIA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMIL
Sbjct: 73 VLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 132
Query: 361 ILIFAEVLGLYGLIVALILSTK 426
ILIFAEVLGLYGLIVALILSTK
Sbjct: 133 ILIFAEVLGLYGLIVALILSTK 154
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 189 bits (479), Expect = 5e-48
Identities = 105/145 (72%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
FGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 11 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 70
Query: 181 VLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVG 351
VLIA + NYT+ K H IGIVGDAGVRGTAQQPRLFVG
Sbjct: 71 VLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG 130
Query: 352 MILILIFAEVLGLYGLIVALILSTK 426
MILILIFAEVLGLYGLIVA+ L TK
Sbjct: 131 MILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 188 bits (478), Expect = 6e-48
Identities = 104/142 (73%), Positives = 112/142 (78%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
F VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVVA
Sbjct: 14 FAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVA 73
Query: 181 VLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMIL 360
VLIA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMIL
Sbjct: 74 VLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 133
Query: 361 ILIFAEVLGLYGLIVALILSTK 426
ILIFAEVLGLYGLIVALILSTK
Sbjct: 134 ILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 188 bits (478), Expect = 6e-48
Identities = 103/142 (72%), Positives = 112/142 (78%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
F VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVA
Sbjct: 14 FAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVA 73
Query: 181 VLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMIL 360
VLIA + ++ +S IGIVGDAGVRGTAQQPRLFVGMIL
Sbjct: 74 VLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 133
Query: 361 ILIFAEVLGLYGLIVALILSTK 426
ILIFAEVLGLYGLIVALILSTK
Sbjct: 134 ILIFAEVLGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 188 bits (478), Expect = 6e-48
Identities = 103/142 (72%), Positives = 112/142 (78%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
F VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVA
Sbjct: 14 FAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVA 73
Query: 181 VLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMIL 360
VLIA + ++ +S IGIVGDAGVRGTAQQPRLFVGMIL
Sbjct: 74 VLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMIL 133
Query: 361 ILIFAEVLGLYGLIVALILSTK 426
ILIFAEVLGLYGLIVALILSTK
Sbjct: 134 ILIFAEVLGLYGLIVALILSTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 187 bits (476), Expect = 1e-47
Identities = 104/145 (71%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
FGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 11 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 70
Query: 181 VLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVG 351
VLIA + NYT+ + H IGIVGDAGVRGTAQQPRLFVG
Sbjct: 71 VLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVG 130
Query: 352 MILILIFAEVLGLYGLIVALILSTK 426
MILILIFAEVLGLYGLIVA+ L TK
Sbjct: 131 MILILIFAEVLGLYGLIVAIYLYTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 186 bits (471), Expect = 4e-47
Identities = 103/144 (71%), Positives = 112/144 (77%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
FGVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 14 FGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 73
Query: 181 VLIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGM 354
VLIA + T Y++ K H IGIVGDAGVRGTAQQPRLFVGM
Sbjct: 74 VLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 133
Query: 355 ILILIFAEVLGLYGLIVALILSTK 426
ILILIFAEVLGLYGLIVA+ L TK
Sbjct: 134 ILILIFAEVLGLYGLIVAIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 183 bits (465), Expect = 2e-46
Identities = 102/144 (70%), Positives = 112/144 (77%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
FGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVA
Sbjct: 16 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 75
Query: 181 VLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGM 354
VLIA + + Y++ + H IGIVGDAGVRGTAQQPRLFVGM
Sbjct: 76 VLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 135
Query: 355 ILILIFAEVLGLYGLIVALILSTK 426
ILILIFAEVLGLYGLIVA+ L TK
Sbjct: 136 ILILIFAEVLGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 181 bits (460), Expect = 7e-46
Identities = 101/144 (70%), Positives = 110/144 (76%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 FGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVA 180
FGVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLVVA
Sbjct: 13 FGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVA 72
Query: 181 VLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGM 354
VLIA ++ YT+ + H IGIVGDAGVRGTAQQPRL+VGM
Sbjct: 73 VLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGM 132
Query: 355 ILILIFAEVLGLYGLIVALILSTK 426
ILILIFAEVLGLYGLIVA+ L TK
Sbjct: 133 ILILIFAEVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,872,272
Number of Sequences: 369166
Number of extensions: 879826
Number of successful extensions: 3276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3196
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)