Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_D21
(469 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 206 2e-53
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 206 2e-53
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 205 5e-53
sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha) 204 6e-53
sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha) 204 6e-53
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 202 2e-52
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 202 4e-52
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha) 201 9e-52
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 200 1e-51
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 199 3e-51
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 206 bits (524), Expect = 2e-53
Identities = 96/123 (78%), Positives = 109/123 (88%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFAEL
Sbjct: 316 SVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAEL 375
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
+KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAV
Sbjct: 376 KEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAV 435
Query: 363 GVI 371
GVI
Sbjct: 436 GVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 206 bits (524), Expect = 2e-53
Identities = 94/123 (76%), Positives = 113/123 (91%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTAHIACKFAEL
Sbjct: 314 SVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAEL 373
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
++KIDRRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPPLGRFAVRDM+QTVAV
Sbjct: 374 LEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAV 433
Query: 363 GVI 371
GVI
Sbjct: 434 GVI 436
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 205 bits (521), Expect = 5e-53
Identities = 95/123 (77%), Positives = 109/123 (88%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFAEL
Sbjct: 316 SVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAEL 375
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
+KIDRRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAV
Sbjct: 376 KEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAV 435
Query: 363 GVI 371
GVI
Sbjct: 436 GVI 438
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 204 bits (520), Expect = 6e-53
Identities = 93/123 (75%), Positives = 113/123 (91%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLDCHTAHIACKF+EL
Sbjct: 314 SVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSEL 373
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAVRDM+QTVAV
Sbjct: 374 IEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAV 433
Query: 363 GVI 371
GVI
Sbjct: 434 GVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 204 bits (520), Expect = 6e-53
Identities = 93/123 (75%), Positives = 113/123 (91%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNVCSDSK+DPA+++ F AQVII+NHPG+I AGY+PVLDCHTAHIACKF+EL
Sbjct: 314 SVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSEL 373
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
++KIDRRSGK +ED PK KSGD+ +V++VPSKPMCVE +++YPPLGRFAVRDM+QTVAV
Sbjct: 374 IEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAV 433
Query: 363 GVI 371
GVI
Sbjct: 434 GVI 436
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 202 bits (515), Expect = 2e-52
Identities = 93/123 (75%), Positives = 111/123 (90%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
S+K+IRRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PVLDCHTAHIACKFAEL
Sbjct: 316 SIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAEL 375
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
+K+DRRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+QTVAV
Sbjct: 376 KEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAV 435
Query: 363 GVI 371
GVI
Sbjct: 436 GVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 202 bits (513), Expect = 4e-52
Identities = 96/123 (78%), Positives = 107/123 (86%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL
Sbjct: 316 SVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAEL 375
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
+KIDRRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM+QTVAV
Sbjct: 376 KQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAV 435
Query: 363 GVI 371
GVI
Sbjct: 436 GVI 438
>sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 201 bits (510), Expect = 9e-52
Identities = 94/123 (76%), Positives = 112/123 (91%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNV SDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTAHIACKFAEL
Sbjct: 314 SVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAEL 373
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
++KIDRR+GK LE PK KSGDA +V+LVPSKPMCVE+++EYPPLGRFAVRDM+QTVAV
Sbjct: 374 LEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAV 433
Query: 363 GVI 371
G+I
Sbjct: 434 GII 436
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 200 bits (509), Expect = 1e-51
Identities = 95/123 (77%), Positives = 107/123 (86%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL
Sbjct: 316 SVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAEL 375
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
+KIDRRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTVAV
Sbjct: 376 KQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAV 435
Query: 363 GVI 371
GVI
Sbjct: 436 GVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 199 bits (506), Expect = 3e-51
Identities = 92/123 (74%), Positives = 110/123 (89%)
Frame = +3
Query: 3 SVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAEL 182
SVK+IRRG+VCSDSK DPA++A F AQVIIMNHPG+I GY+PVLDCHTAHIACKF EL
Sbjct: 316 SVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNEL 375
Query: 183 MKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAV 362
+K+DRR+GK +EDFPK KSGDAG+V L+P+KP+CVE+F++Y PLGRFAVRDM+QTVAV
Sbjct: 376 KEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAV 435
Query: 363 GVI 371
GVI
Sbjct: 436 GVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,176,325
Number of Sequences: 369166
Number of extensions: 973633
Number of successful extensions: 2679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2665
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)