Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_D09
(362 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZDZ6|Y167_RICPR Hypothetical protein RP167 40 0.002
sp|Q9HE88|SEC8_NEUCR Probable exocyst complex component sec8 30 1.3
sp|Q9IA27|HXA10_HETFR Homeobox protein Hox-A10 30 1.3
sp|Q92794|MYST3_HUMAN Histone acetyltransferase MYST3 (MYST... 29 3.0
sp|P80220|T22D3_PIG TSC22 domain family protein 3 (Glucocor... 28 5.1
sp|Q9EQZ1|T22D3_RAT TSC22 domain family protein 3 (Glucocor... 28 5.1
sp|P24851|TALA_POVBO Large T antigen 28 5.1
sp|P33948|ERD2_PLAFA ER lumen protein retaining receptor >g... 28 6.6
sp|Q9Z2S7|T22D3_MOUSE TSC22 domain family protein 3 (Glucoc... 28 6.6
sp|Q8PXD4|Y1287_METMA Hypothetical UPF0313 protein MM1287 28 6.6
>sp|Q9ZDZ6|Y167_RICPR Hypothetical protein RP167
Length = 78
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +1
Query: 190 VEKEPLEKYSNNTNPLTGEVEGPRGPEPTRYGDWERKGRCIDF 318
VE+E L K E+ G +G EPTRYGDW+ KG+ DF
Sbjct: 44 VEEENLSKEK--------EIGGIKGLEPTRYGDWQHKGKVTDF 78
>sp|Q9HE88|SEC8_NEUCR Probable exocyst complex component sec8
Length = 1111
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 169 SDKYQPYVEKEPLEKYSNNTNPLTGEVEGPRGPEPTRYGDWERKG 303
+D Y PY + P ++Y +TNP + R P R R G
Sbjct: 25 NDDYDPYGDGYPSDRYGTSTNPASRPSTASRNAPPPRSAQRGRTG 69
>sp|Q9IA27|HXA10_HETFR Homeobox protein Hox-A10
Length = 271
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 85 HLSKVNHSKDLKKAVTPLGKHDSPVESESDKYQPYVEKEPLEKYSNNTNPLTGE 246
HL+ + ++ + A + + SPV SES+K P E + K N N LT +
Sbjct: 142 HLTCSSEREEAEAAASSANEESSPVPSESNKNSPEKETKGEVKAENGANWLTAK 195
>sp|Q92794|MYST3_HUMAN Histone acetyltransferase MYST3 (MYST protein 3) (MOZ, YBF2/SAS3,
SAS2 and TIP60 protein 3) (Runt-related transcription
factor binding protein 2) (Monocytic leukemia zinc finger
protein) (Zinc finger protein 220)
Length = 2004
Score = 29.3 bits (64), Expect = 3.0
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +1
Query: 136 LGKHDSPVESESDKYQPYVEKEPLEKYSNNTNPLTGEV----EGPRGPEPTRYGDWERKG 303
+GK S E D Y EK+P ++ L+ +V P +P+R G W RK
Sbjct: 813 VGKSVSHENKEQDSYSVESEKKPEVMAPVSSTRLSKQVLPHDSLPANSQPSRRGRWGRKN 872
Query: 304 RCIDF*FGFYD 336
R FG D
Sbjct: 873 RKTQERFGDKD 883
>sp|P80220|T22D3_PIG TSC22 domain family protein 3 (Glucocorticoid-induced leucine
zipper protein) (Delta sleep-inducing peptide
immunoreactor) (DSIP-immunoreactive peptide) (DIP
protein)
Length = 77
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 115 LKKAVTPLGKHDSPVESESDKYQPYVEKEPLEKYSNNTNPLTGEVEGPRGPE 270
LK+ + L + +S +E E+ + E LEK+ + +P E P PE
Sbjct: 19 LKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPETPEAPE 70
>sp|Q9EQZ1|T22D3_RAT TSC22 domain family protein 3 (Glucocorticoid-induced leucine
zipper protein)
Length = 134
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 115 LKKAVTPLGKHDSPVESESDKYQPYVEKEPLEKYSNNTNPLTGEVEGPRGPE 270
LK+ + L + +S +E E+ + E LEK+ + +P E P PE
Sbjct: 76 LKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPE 127
>sp|P24851|TALA_POVBO Large T antigen
Length = 586
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 326 PN*KSMQRPLRSQSPYRVGSGPLGPSTSPVNGLVLFEYFSNGSF 195
P+ + P SQ+P + P P TSP VL EY SN F
Sbjct: 68 PSDNEEENPAGSQAPGSQATPPKKPRTSPDFPEVLKEYVSNALF 111
>sp|P33948|ERD2_PLAFA ER lumen protein retaining receptor
sp|Q76NM1|ERD2_PLAF7 ER lumen protein retaining receptor
Length = 221
Score = 28.1 bits (61), Expect = 6.6
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -3
Query: 345 FILIIKSKLEINATSFALPISISCRFRTSWTLNFSC*WIGII*ILFQWFFFYIWLIFITF 166
+ILI+K K N I ISCR + + + F C +I + F + FY ++ ITF
Sbjct: 17 YILIMKLKKSKNC------IGISCRMQELYLIVFLCRYID---LFFVFVSFYNTVMKITF 67
Query: 165 TL 160
L
Sbjct: 68 IL 69
>sp|Q9Z2S7|T22D3_MOUSE TSC22 domain family protein 3 (Glucocorticoid-induced leucine
zipper protein) (TSC22-related inducible leucine zipper
3) (Tilz3)
Length = 137
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 115 LKKAVTPLGKHDSPVESESDKYQPYVEKEPLEKYSNNTNPLTGEVEGPRGPE 270
LK+ + L + +S +E E+ + E LEK+ + +P E P PE
Sbjct: 76 LKEQIRELLEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPE 127
>sp|Q8PXD4|Y1287_METMA Hypothetical UPF0313 protein MM1287
Length = 626
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +1
Query: 241 GEVEGPRGPEPTRYG----DWERKGRCID 315
G + G GP YG WE+KG C+D
Sbjct: 374 GIINGVGGPTANMYGMECRSWEKKGACLD 402
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,797,880
Number of Sequences: 369166
Number of extensions: 732118
Number of successful extensions: 2168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2168
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)