Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_D05
(249 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15511|ARPC5_HUMAN Actin-related protein 2/3 complex sub... 60 1e-09
sp|Q9CPW4|ARPC5_MOUSE Actin-related protein 2/3 complex sub... 60 2e-09
sp|P91167|ARPC5_CAEEL Probable actin-related protein 2/3 co... 44 9e-05
sp|P40518|ARPC5_YEAST ARP2/3 complex 16 kDa subunit (p16-ARC) 43 3e-04
sp|Q10316|ARPC5_SCHPO ARP2/3 complex 16 kDa subunit (p16-ARC) 39 0.004
sp|P37201|NCPR_CANTR NADPH--cytochrome P450 reductase (CPR)... 28 5.0
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 28 5.0
sp|Q70JS2|KELC_ANOST Ring canal kelch homolog (Kelch-like p... 28 6.5
sp|P50126|NCPR_CANMA NADPH--cytochrome P450 reductase (CPR)... 28 8.5
sp|O84220|SURE_CHLTR 5'-nucleotidase surE (Nucleoside 5'-mo... 28 8.5
>sp|O15511|ARPC5_HUMAN Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa
subunit) (p16-ARC)
sp|Q5R516|ARPC5_PONPY Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa
subunit) (p16-ARC)
Length = 151
Score = 60.5 bits (145), Expect = 1e-09
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +1
Query: 1 SSEIKKTIENLSDKELDILLKYVYKAFEDPPENSNVLLLTWQDTIFQRSKFGGMMRVLTD 180
+++I+K +++L +D+L+KY+YK FE P +NS+ +LL W + G ++RVLT
Sbjct: 88 ANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTA 147
Query: 181 RKRV 192
RK V
Sbjct: 148 RKTV 151
>sp|Q9CPW4|ARPC5_MOUSE Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa
subunit) (p16-ARC)
Length = 151
Score = 60.1 bits (144), Expect = 2e-09
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +1
Query: 1 SSEIKKTIENLSDKELDILLKYVYKAFEDPPENSNVLLLTWQDTIFQRSKFGGMMRVLTD 180
+++I+K +++L +D+L+KY+YK FE P +NS+ +LL W + G ++RVLT
Sbjct: 88 ANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTA 147
Query: 181 RKRV 192
RK V
Sbjct: 148 RKTV 151
>sp|P91167|ARPC5_CAEEL Probable actin-related protein 2/3 complex subunit 5 (ARP2/3
complex 16 kDa subunit) (p16-ARC)
Length = 146
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/64 (32%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +1
Query: 4 SEIKKTIENLSDKELDILLKYVYKAFEDPPENSNVL-LLTWQDTIFQRSKFGGMMRVLTD 180
++I++++ LS++ DIL+KY+YKA + +++ L LL W + + G ++RVL++
Sbjct: 83 TDIEESVHKLSNENGDILMKYIYKAMQLCSDSATCLSLLLWHSQLVSKFGQGSIVRVLSN 142
Query: 181 RKRV 192
R+R+
Sbjct: 143 RQRL 146
>sp|P40518|ARPC5_YEAST ARP2/3 complex 16 kDa subunit (p16-ARC)
Length = 154
Score = 42.7 bits (99), Expect = 3e-04
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 4 SEIKKTIENLSDKELDILLKYVYKAFEDPP-ENSNVLLLTWQDTIFQRSKFGGMMRVLTD 180
++I I+NLSD + D+L+KY+YK P + +LL W + I Q S ++ ++D
Sbjct: 91 ADIGNVIKNLSDSQRDVLVKYLYKGMSVPQGQKQGGVLLAWLERITQVSGVTPIVHYISD 150
Query: 181 RKRV 192
R+ V
Sbjct: 151 RRTV 154
>sp|Q10316|ARPC5_SCHPO ARP2/3 complex 16 kDa subunit (p16-ARC)
Length = 152
Score = 38.9 bits (89), Expect = 0.004
Identities = 15/61 (24%), Positives = 36/61 (59%)
Frame = +1
Query: 1 SSEIKKTIENLSDKELDILLKYVYKAFEDPPENSNVLLLTWQDTIFQRSKFGGMMRVLTD 180
+++I ++ S +E+D ++ ++Y+ +P ++ +LL W + + + S G ++RVL
Sbjct: 89 AADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIVRVLNS 148
Query: 181 R 183
R
Sbjct: 149 R 149
>sp|P37201|NCPR_CANTR NADPH--cytochrome P450 reductase (CPR) (P450R)
Length = 680
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 116 NKRTLLFSGGSSNALYTYFNKISNSLSDKFSMVFLIS 6
NK TLL G + Y NK+S L +F + +++
Sbjct: 57 NKNTLLLFGSQTGTAEDYANKLSRELHSRFGLKTMVA 93
>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4
Length = 972
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -3
Query: 136 RSYLAKLIKEHCYFQVDLQMLYIHILTKYPIL 41
RS+L KL++ H + +L++LY+ +L +PIL
Sbjct: 787 RSHLHKLVQHHYFASRNLKLLYVDLL--FPIL 816
>sp|Q70JS2|KELC_ANOST Ring canal kelch homolog (Kelch-like protein 1) [Contains: Kelch
short protein]
Length = 1499
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 1 SSEIKKTIENLSDKELDILLKYVYKAFEDPPENSNVLLLT 120
S + + T++ + + L +L++YVY+A + E++ +LLT
Sbjct: 135 SRQDRITLQGVDPRALQLLIEYVYRAVVEVTEDNVQILLT 174
>sp|P50126|NCPR_CANMA NADPH--cytochrome P450 reductase (CPR) (P450R)
Length = 680
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 116 NKRTLLFSGGSSNALYTYFNKISNSLSDKFSMVFLIS 6
NK TLL G + Y NK+S + +F + +++
Sbjct: 57 NKNTLLLFGSQTGTAEDYANKLSREIHSRFGLKTMVA 93
>sp|O84220|SURE_CHLTR 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase)
Length = 283
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 172 ALSSYHRIYFFERSYLAKLIKEHCYFQV 89
ALS I FF+++++A LI+ C F V
Sbjct: 135 ALSQSENIAFFQKAHMASLIRSLCEFTV 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,413,416
Number of Sequences: 369166
Number of extensions: 378720
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)