Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_D03
(631 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 197 1e-50
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 197 2e-50
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 196 4e-50
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 195 7e-50
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 194 2e-49
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 193 3e-49
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 193 3e-49
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 193 3e-49
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 192 8e-49
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 190 3e-48
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 197 bits (502), Expect = 1e-50
Identities = 108/146 (73%), Positives = 116/146 (79%)
Frame = +3
Query: 6 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 185
Y+ FFGVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 10 YSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 69
Query: 186 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 365
LVVAVLIA + T+ +S IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 366 GMILILIFAEVLGLYGLIVALILSTK 443
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 197 bits (501), Expect = 2e-50
Identities = 109/150 (72%), Positives = 116/150 (77%), Gaps = 3/150 (2%)
Frame = +3
Query: 3 IYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIY 182
IY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIY
Sbjct: 6 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 65
Query: 183 GLVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQP 353
GLVVAVLIA + NYT+ K H IGIVGDAGVRGTAQQP
Sbjct: 66 GLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 125
Query: 354 RLFVGMILILIFAEVLGLYGLIVALILSTK 443
RLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 126 RLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 196 bits (498), Expect = 4e-50
Identities = 108/150 (72%), Positives = 116/150 (77%), Gaps = 3/150 (2%)
Frame = +3
Query: 3 IYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIY 182
IY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIY
Sbjct: 6 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 65
Query: 183 GLVVAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQP 353
GLVVAVLIA + NYT+ + H IGIVGDAGVRGTAQQP
Sbjct: 66 GLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 125
Query: 354 RLFVGMILILIFAEVLGLYGLIVALILSTK 443
RLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 126 RLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 195 bits (496), Expect = 7e-50
Identities = 107/146 (73%), Positives = 117/146 (80%)
Frame = +3
Query: 6 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 185
Y+ FFGV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYG
Sbjct: 9 YSAFFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 68
Query: 186 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 365
LVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFV
Sbjct: 69 LVVAVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 128
Query: 366 GMILILIFAEVLGLYGLIVALILSTK 443
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 129 GMILILIFAEVLGLYGLIVALILSTK 154
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 194 bits (492), Expect = 2e-49
Identities = 106/149 (71%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 IYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIY 182
+Y PFFGVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIY
Sbjct: 9 VYGPFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 68
Query: 183 GLVVAVLIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPR 356
GLVVAVLIA + T Y++ K H IGIVGDAGVRGTAQQPR
Sbjct: 69 GLVVAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPR 128
Query: 357 LFVGMILILIFAEVLGLYGLIVALILSTK 443
LFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 129 LFVGMILILIFAEVLGLYGLIVAIYLYTK 157
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 193 bits (490), Expect = 3e-49
Identities = 106/146 (72%), Positives = 114/146 (78%)
Frame = +3
Query: 6 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 185
Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYG
Sbjct: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYG 69
Query: 186 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 365
LVVAVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 366 GMILILIFAEVLGLYGLIVALILSTK 443
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 193 bits (490), Expect = 3e-49
Identities = 105/146 (71%), Positives = 114/146 (78%)
Frame = +3
Query: 6 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 185
Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYG
Sbjct: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYG 69
Query: 186 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 365
LVVAVLIA + ++ +S IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 366 GMILILIFAEVLGLYGLIVALILSTK 443
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 193 bits (490), Expect = 3e-49
Identities = 105/146 (71%), Positives = 114/146 (78%)
Frame = +3
Query: 6 YTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYG 185
Y FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYG
Sbjct: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYG 69
Query: 186 LVVAVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 365
LVVAVLIA + ++ +S IGIVGDAGVRGTAQQPRLFV
Sbjct: 70 LVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFV 129
Query: 366 GMILILIFAEVLGLYGLIVALILSTK 443
GMILILIFAEVLGLYGLIVALILSTK
Sbjct: 130 GMILILIFAEVLGLYGLIVALILSTK 155
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 192 bits (487), Expect = 8e-49
Identities = 106/149 (71%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 IYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIY 182
IY PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIY
Sbjct: 11 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 70
Query: 183 GLVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPR 356
GLVVAVLIA + + Y++ + H IGIVGDAGVRGTAQQPR
Sbjct: 71 GLVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPR 130
Query: 357 LFVGMILILIFAEVLGLYGLIVALILSTK 443
LFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 131 LFVGMILILIFAEVLGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 190 bits (482), Expect = 3e-48
Identities = 104/149 (69%), Positives = 115/149 (77%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 IYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIY 182
+Y+PFFGVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIY
Sbjct: 8 MYSPFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIY 67
Query: 183 GLVVAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPR 356
GLVVAVLIA ++ YT+ + H IGIVGDAGVRGTAQQPR
Sbjct: 68 GLVVAVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPR 127
Query: 357 LFVGMILILIFAEVLGLYGLIVALILSTK 443
L+VGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 128 LYVGMILILIFAEVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,326,386
Number of Sequences: 369166
Number of extensions: 1045168
Number of successful extensions: 3575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)