Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_D01-2
(469 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQC7|NB5M_MOUSE NADH-ubiquinone oxidoreductase B15 sub... 46 5e-05
sp|Q8K9C0|CORC_BUCAP Magnesium and cobalt efflux protein corC 30 2.7
sp|Q03770|SSY1_YEAST Putative amino-acid permease SSY1 28 7.9
sp|P39774|SPAB_BACSU Subtilin biosynthesis protein spaB 28 7.9
>sp|Q9CQC7|NB5M_MOUSE NADH-ubiquinone oxidoreductase B15 subunit (Complex I-B15) (CI-B15)
Length = 129
Score = 45.8 bits (107), Expect = 5e-05
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +1
Query: 64 MSSTFDPWKTYDVTVEEQKAILERRQMREAMKAEFKKKYTDPFRPFQGHIFDPQIQR-NY 240
+ ST DP + YDV+ E ++A +ER +R +K E+ +Y DP R HI DP + R Y
Sbjct: 14 LPSTLDPAE-YDVSPETRRAQVERLSIRARLKREYLLQYNDPKR--VSHIEDPALIRWTY 70
Query: 241 SARFTFTEYFRPS-KYVILSASLIVVPVLIYAILVRRGVRRRHHDIDIGKVEIK 399
+ FRP+ K +L A P++ + + + R+ I GK++ K
Sbjct: 71 ARSANIYPNFRPTPKNSLLGAVAGFGPLIFWYYVFKTDRDRKERLIQEGKLDRK 124
>sp|Q8K9C0|CORC_BUCAP Magnesium and cobalt efflux protein corC
Length = 291
Score = 30.0 bits (66), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 47 NFNITKCLQLLILGKHMMLPLKSRRQFWKE 136
N+N+ KCL ++I H P+ SR Q + E
Sbjct: 84 NYNLNKCLDIIIESAHSRFPVMSRDQNYVE 113
>sp|Q03770|SSY1_YEAST Putative amino-acid permease SSY1
Length = 852
Score = 28.5 bits (62), Expect = 7.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 142 MREAMKAEFKKKYTDPFRPFQGHIFDPQIQRNYSARFTFTEYFR 273
M + + E ++ Y +P + FQ ++ ++QR Y R E+FR
Sbjct: 91 MEDMLSPEEEQIYQEPIQDFQ--TYNKRVQREYELRERMEEFFR 132
>sp|P39774|SPAB_BACSU Subtilin biosynthesis protein spaB
Length = 1030
Score = 28.5 bits (62), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 64 MSSTFDPWKTYDVTVEEQKAILERRQMREAMKAEFKK 174
M S + +++T EEQ LER ++ + EFKK
Sbjct: 890 MVSVIQFLEQFELTFEEQLTFLERNSLQNEYRTEFKK 926
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,639,468
Number of Sequences: 369166
Number of extensions: 701060
Number of successful extensions: 1629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)