Planarian EST Database


Dr_sW_004_C22

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_004_C22
         (508 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q71V39|EF1A2_RABIT  Elongation factor 1-alpha 2 (EF-1-alp...   234   9e-62
sp|P62631|EF1A2_MOUSE  Elongation factor 1-alpha 2 (EF-1-alp...   233   2e-61
sp|P28295|EF1A_ABSGL  Elongation factor 1-alpha (EF-1-alpha)      233   3e-61
sp|P06805|EF1A1_RHIRA  Elongation factor 1-alpha (EF-1-alpha)     231   7e-61
sp|P14864|EF1A2_RHIRA  Elongation factor 1-alpha (EF-1-alpha)     231   7e-61
sp|P27592|EF1A_ONCVO  Elongation factor 1-alpha (EF-1-alpha)      230   1e-60
sp|P17508|EF1A3_XENLA  Elongation factor 1-alpha, oocyte for...   229   2e-60
sp|P17507|EF1A2_XENLA  Elongation factor 1-alpha, oocyte for...   228   6e-60
sp|P10126|EF1A1_MOUSE  Elongation factor 1-alpha 1 (EF-1-alp...   227   1e-59
sp|P68105|EF1A1_RABIT  Elongation factor 1-alpha 1 (EF-1-alp...   227   1e-59
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
           A-2) (eEF1A-2) (Statin S1)
 sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
           A-2) (eEF1A-2) (Statin S1)
          Length = 463

 Score =  234 bits (597), Expect = 9e-62
 Identities = 109/137 (79%), Positives = 123/137 (89%)
 Frame = +3

Query: 3   ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 182
           ALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A  F +QVII+NHPG+I AGYSPV+
Sbjct: 302 ALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVI 361

Query: 183 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 362
           DCHTAHIACKFAEL +KIDRRSGK LED PK  KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPL 421

Query: 363 GRFAVRDMKQTVAVGVI 413
           GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
           A-2) (eEF1A-2) (Statin S1)
 sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
           A-2) (eEF1A-2) (Statin S1)
          Length = 463

 Score =  233 bits (594), Expect = 2e-61
 Identities = 108/137 (78%), Positives = 123/137 (89%)
 Frame = +3

Query: 3   ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 182
           ALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A  F +QVII+NHPG+I AGYSPV+
Sbjct: 302 ALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVI 361

Query: 183 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 362
           DCHTAHIACKFAEL +KIDRRSGK LED PK  KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPL 421

Query: 363 GRFAVRDMKQTVAVGVI 413
           GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
          Length = 458

 Score =  233 bits (593), Expect = 3e-61
 Identities = 106/136 (77%), Positives = 126/136 (92%)
 Frame = +3

Query: 6   LPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLD 185
           LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A  F AQVI++NHPG+I AGY+PVLD
Sbjct: 301 LPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLD 360

Query: 186 CHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLG 365
           CHTAHIACKFAEL++KIDRRSGK LED PK  KSGD+ +V+++PSKPMCVE +++YPPLG
Sbjct: 361 CHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLG 420

Query: 366 RFAVRDMKQTVAVGVI 413
           RFAVRDM+QTVAVGVI
Sbjct: 421 RFAVRDMRQTVAVGVI 436
>sp|P06805|EF1A1_RHIRA Elongation factor 1-alpha (EF-1-alpha)
          Length = 458

 Score =  231 bits (589), Expect = 7e-61
 Identities = 105/136 (77%), Positives = 126/136 (92%)
 Frame = +3

Query: 6   LPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLD 185
           LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA+++  F AQVII+NHPG+I AGY+PVLD
Sbjct: 301 LPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLD 360

Query: 186 CHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLG 365
           CHTAHIACKF+EL++KIDRRSGK +ED PK  KSGD+ +V++VPSKPMCVE +++YPPLG
Sbjct: 361 CHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLG 420

Query: 366 RFAVRDMKQTVAVGVI 413
           RFAVRDM+QTVAVGVI
Sbjct: 421 RFAVRDMRQTVAVGVI 436
>sp|P14864|EF1A2_RHIRA Elongation factor 1-alpha (EF-1-alpha)
          Length = 458

 Score =  231 bits (589), Expect = 7e-61
 Identities = 105/136 (77%), Positives = 126/136 (92%)
 Frame = +3

Query: 6   LPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLD 185
           LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA+++  F AQVII+NHPG+I AGY+PVLD
Sbjct: 301 LPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLD 360

Query: 186 CHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLG 365
           CHTAHIACKF+EL++KIDRRSGK +ED PK  KSGD+ +V++VPSKPMCVE +++YPPLG
Sbjct: 361 CHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLG 420

Query: 366 RFAVRDMKQTVAVGVI 413
           RFAVRDM+QTVAVGVI
Sbjct: 421 RFAVRDMRQTVAVGVI 436
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
          Length = 464

 Score =  230 bits (587), Expect = 1e-60
 Identities = 105/137 (76%), Positives = 125/137 (91%)
 Frame = +3

Query: 3   ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 182
           ALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++   F AQVIIMNHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVL 361

Query: 183 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 362
           DCHTAHIACKFAEL +K+DRRSGK +ED PK  KSGDAG++ L+P+KP+CVETF+EYPPL
Sbjct: 362 DCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPL 421

Query: 363 GRFAVRDMKQTVAVGVI 413
           GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
          Length = 461

 Score =  229 bits (585), Expect = 2e-60
 Identities = 108/137 (78%), Positives = 121/137 (88%)
 Frame = +3

Query: 3   ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 182
           ALPGDNVGFN+KN+SVK+IRRGNV  DSK+DP  QA  F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVL 361

Query: 183 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 362
           DCHTAHIACKFAEL +KIDRRSGK LED PK  KSGDA +V ++P KPMCVETFS+YPPL
Sbjct: 362 DCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPL 421

Query: 363 GRFAVRDMKQTVAVGVI 413
           GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
           p48)
          Length = 461

 Score =  228 bits (581), Expect = 6e-60
 Identities = 107/137 (78%), Positives = 121/137 (88%)
 Frame = +3

Query: 3   ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 182
           ALPGDNVGFN+KN+SVK+IRRGNV  DSK+DP  QA  F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVL 361

Query: 183 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 362
           DCHTAHIACKFAEL +KIDRRSGK LED PK  KSGDA +V ++P KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPL 421

Query: 363 GRFAVRDMKQTVAVGVI 413
           GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
 sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
 sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
          Length = 462

 Score =  227 bits (578), Expect = 1e-59
 Identities = 107/137 (78%), Positives = 121/137 (88%)
 Frame = +3

Query: 3   ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 182
           ALPGDNVGFN+KNVSVK++RRGNV  DSK+DP  +A  F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVL 361

Query: 183 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 362
           DCHTAHIACKFAEL +KIDRRSGK LED PK  KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPL 421

Query: 363 GRFAVRDMKQTVAVGVI 413
           GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
 sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
 sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
 sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
 sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
           A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
          Length = 462

 Score =  227 bits (578), Expect = 1e-59
 Identities = 107/137 (78%), Positives = 121/137 (88%)
 Frame = +3

Query: 3   ALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVL 182
           ALPGDNVGFN+KNVSVK++RRGNV  DSK+DP  +A  F AQVII+NHPG+I AGY+PVL
Sbjct: 302 ALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVL 361

Query: 183 DCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPL 362
           DCHTAHIACKFAEL +KIDRRSGK LED PK  KSGDA +V +VP KPMCVE+FS+YPPL
Sbjct: 362 DCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPL 421

Query: 363 GRFAVRDMKQTVAVGVI 413
           GRFAVRDM+QTVAVGVI
Sbjct: 422 GRFAVRDMRQTVAVGVI 438
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,655,769
Number of Sequences: 369166
Number of extensions: 1097030
Number of successful extensions: 3098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3049
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)