Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_C01
(187 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 42 6e-04
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 35 0.069
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 34 0.12
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 33 0.20
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 32 0.45
sp|Q9XTD6|NAS12_CAEEL Zinc metalloproteinase nas-12 precurs... 31 0.99
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 30 1.3
sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precurs... 30 1.3
sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion)... 30 1.7
sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D 29 3.8
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 41.6 bits (96), Expect = 6e-04
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 11 CPKSCHFCGDCADSRPDCDVLKERGDCDKMD-DRV---CRKTCGHC 136
CPK+C+ C C D+ C + RG C K D D+V C K+C C
Sbjct: 134 CPKTCNACNICEDANKMCPIWVPRGFCSKFDHDKVQKSCAKSCNIC 179
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 34.7 bits (78), Expect = 0.069
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Frame = +2
Query: 8 KCPKSCHFC------GDCADSRPDCDVLKERGDC--DKMDDRVCRKTCGHC 136
+C SC C G CAD DC RG+C +K CR++C C
Sbjct: 607 QCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTC 657
Score = 28.1 bits (61), Expect = 6.4
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Frame = +2
Query: 11 CPKSCHFCG-------DCADSRPDCDVLKERGDCDKMD---DRVCRKTCGHC 136
C SC C +C+D +C + G+C+K CR +C C
Sbjct: 489 CKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKC 540
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 33.9 bits (76), Expect = 0.12
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Frame = +2
Query: 11 CPKSCHFCG--------DCADSRPDCDVLKERGDCDKM------DDRVCRKTCGHC 136
CPK+C FCG C DS +C ++ G C + C KTC C
Sbjct: 95 CPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 33.1 bits (74), Expect = 0.20
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 8 KCPKSCHFCGDCADSRPDCDVLKERGDCDKM 100
+CP CH G C D R +CD E DC ++
Sbjct: 376 RCPSDCHNRGRCLDGRCECDDGFEGEDCGEL 406
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 136
+CP CH G C R +C+ + DC +M C C G C
Sbjct: 438 RCPNDCHGRGRCVQGRCECEHGFQGYDCSEMS---CPHDCHQHGRC 480
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 8 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 127
+CP +CH G C D + C+ DC ++ C C
Sbjct: 189 ECPSNCHLRGQCVDGQCVCNEGFTGEDCSQL---ACPSDC 225
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 32.0 bits (71), Expect = 0.45
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 8 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC-GH 133
+CP CH G C D R +CD DC ++ C C GH
Sbjct: 376 RCPADCHNRGRCVDGRCECDDGFTGADCGELK---CPNGCSGH 415
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 8 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 127
+CP +CH G C D + CD DC ++ C C
Sbjct: 189 ECPGNCHLRGRCIDGQCICDDGFTGEDCSQL---ACPSDC 225
Score = 28.1 bits (61), Expect = 6.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 11 CPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTCGH 133
CP CH G C + CD DC DR C + C +
Sbjct: 470 CPNDCHQHGRCVNGMCVCDDGYTGEDC---RDRQCPRDCSN 507
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 136
+CP CH G C + + C+ + DC M C C G C
Sbjct: 438 RCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMS---CPNDCHQHGRC 480
>sp|Q9XTD6|NAS12_CAEEL Zinc metalloproteinase nas-12 precursor (Nematode astacin 12)
Length = 384
Score = 30.8 bits (68), Expect = 0.99
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Frame = +2
Query: 41 CADSRPDCDVLKERGDC-----DKMDDRVCRKTCGHC 136
C D P CD+ G C D + ++C KTC C
Sbjct: 348 CEDKHPRCDIYSHNGFCTLPFYDDVRYQLCAKTCNLC 384
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 5 NKCPKSCHFCGDCADSRPDCDV---LKERGDCDKMDDRVCRKTCGHC 136
N+C ++C+ C DC D +C L + + + C+KTCG C
Sbjct: 48 NRCQRTCNTC-DCRDEANNCAASINLCQNPTFEPLVRDRCQKTCGLC 93
>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
Length = 527
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +2
Query: 35 GDCADSRPDCDVLKERGDCD-----KMDDRVCRKTCGHC 136
G C D R DC+ L G C+ + C +CG C
Sbjct: 443 GKCEDRRKDCEFLARAGHCESRFSIRFMTENCANSCGKC 481
>sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225)
Length = 1808
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 11 CPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 136
CP +CH G C D+ CD DC ++ +C C G C
Sbjct: 285 CPNNCHNRGRCVDNECVCDEGYTGEDCGEL---ICPNDCFDRGRC 326
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 136
+CP CH G C + R CD DC ++ C C G C
Sbjct: 501 RCPNDCHNRGRCVEGRCVCDNGFMGEDCGELS---CPNDCHQHGRC 543
>sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D
Length = 264
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 17 KSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTCGHC 136
++C+ CGDC ++ P +V ++ GD ++ + + CG C
Sbjct: 171 ENCNGCGDCIEACPR-NVFEKDGDKVRVKNVMACSMCGEC 209
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,918,771
Number of Sequences: 369166
Number of extensions: 330621
Number of successful extensions: 1319
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)