Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_B24
(831 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80YV3|TRRAP_MOUSE Transformation/transcription domain-a... 32 1.6
sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-a... 32 2.1
sp|P56223|PO6F1_RAT POU domain, class 6, transcription fact... 30 6.2
sp|Q9GLM4|TENS_BOVIN Tensin 30 6.2
sp|Q8NAT2|TDRD5_HUMAN Tudor domain-containing protein 5 30 8.2
>sp|Q80YV3|TRRAP_MOUSE Transformation/transcription domain-associated protein (Tra1
homolog)
Length = 2565
Score = 32.3 bits (72), Expect = 1.6
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -1
Query: 369 ICS*NSLIVFL*NLW*YSSL--RHRSIVGWFTNWRNPSLLMICLLRSCHTHRSWSIIIRL 196
+ S +SL+ L +W + RHR TNW+ P LL CLL C + I +
Sbjct: 357 LASQHSLVSQLRRVWVSETFQERHRKENMAATNWKEPKLLAFCLLNYCKRNYG-DIELLF 415
Query: 195 NRFRLIHCRFFC 160
R RF C
Sbjct: 416 QLLRAFTGRFLC 427
>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein (350/400 kDa
PCAF-associated factor) (PAF350/400) (STAF40) (Tra1
homolog)
Length = 3859
Score = 32.0 bits (71), Expect = 2.1
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -1
Query: 369 ICS*NSLIVFL*NLW*YSSL--RHRSIVGWFTNWRNPSLLMICLLRSCHTHRSWSIIIRL 196
+ S +SL+ L +W + RHR TNW+ P LL CLL C + I +
Sbjct: 1657 LASQHSLVSQLRRVWVSENFQERHRKENMAATNWKEPKLLAYCLLNYCKRNYG-DIELLF 1715
Query: 195 NRFRLIHCRFFC 160
R RF C
Sbjct: 1716 QLLRAFTGRFLC 1727
>sp|P56223|PO6F1_RAT POU domain, class 6, transcription factor 1 (Brain-specific
homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein)
Length = 301
Score = 30.4 bits (67), Expect = 6.2
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +1
Query: 163 EEAAMYQTKPVQPYYYTPAPVGMATSQQTYHQQRRISPISKPSNYAPVP-----QRTISP 327
E A + +P+QP P P + TS +P KPS AP+P T+S
Sbjct: 77 ESPAKSEVQPIQPTQAVPPPAVILTSP---------APALKPSASAPIPITCSETPTVSQ 127
Query: 328 KVSQEH 345
VS+ H
Sbjct: 128 LVSKPH 133
>sp|Q9GLM4|TENS_BOVIN Tensin
Length = 1715
Score = 30.4 bits (67), Expect = 6.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 187 KPVQPYYYTPAPVGMATSQQTYHQQRRISP-ISKPSNYAPVPQRTISPK 330
+P PY Y P P G Q+YH + SP S S++ P Q ++ P+
Sbjct: 794 RPYSPYDYQPCPTG---PNQSYHPK---SPATSSSSSFLPTTQSSVGPQ 836
>sp|Q8NAT2|TDRD5_HUMAN Tudor domain-containing protein 5
Length = 682
Score = 30.0 bits (66), Expect = 8.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 130 ETVSGSGTIKAEEAAMYQTKPVQPYYYTPAPVGMATSQQTYHQQRRISPISKPS 291
E +S G + A+Y T P +G + Q +++ R+ISP SK S
Sbjct: 309 ENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQHYFNEDRKISPQSKES 362
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.312 0.125 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,055,722
Number of Sequences: 369166
Number of extensions: 1104058
Number of successful extensions: 3053
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3050
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)