Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_B21
(233 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O36453|IE0_NPVLD Immediate-early protein IE-0 (Immediate... 28 5.1
sp|Q9I351|GCH12_PSEAE GTP cyclohydrolase I 2 (GTP-CH-I 2) 28 5.1
sp|Q8DJ26|IDI2_SYNEL Isopentenyl-diphosphate delta-isomeras... 28 6.6
>sp|O36453|IE0_NPVLD Immediate-early protein IE-0 (Immediate early 0 protein) (Immediate
early transactivator 0)
Length = 258
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Frame = +1
Query: 25 DAHHNRFVLGNLTPPITYIDSSKLSSDNQF*RLINDIQ-ICTFIR---------HNLLVF 174
D HH + + PP+ + D + LS+D + LI ++ + + +R HN+ VF
Sbjct: 65 DEHHRKMYDCPIEPPLRFTDDAHLSADRCWHHLIGKLERVVSVLRAMRAMSRFEHNVFVF 124
Query: 175 FIDC 186
C
Sbjct: 125 LPYC 128
>sp|Q9I351|GCH12_PSEAE GTP cyclohydrolase I 2 (GTP-CH-I 2)
Length = 181
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 79 IDSSKLSSDNQF*RLINDIQICTFIRHNLLVFFIDCHI*Y 198
++ + SSDN L+ DI++ + H+LL F H+ Y
Sbjct: 49 VNGALFSSDNSEMVLVKDIELYSLCEHHLLPFIGKAHVAY 88
>sp|Q8DJ26|IDI2_SYNEL Isopentenyl-diphosphate delta-isomerase (IPP isomerase)
(Isopentenyl pyrophosphate isomerase)
Length = 351
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 23/30 (76%)
Frame = -3
Query: 90 RAVDIRDRRSKISKNKTIVMGIGTERIAMK 1
+A +I R +++++ K IVMG+G++R+ ++
Sbjct: 83 QAGEINRRLARVAQQKGIVMGVGSQRVLLE 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,302,916
Number of Sequences: 369166
Number of extensions: 359844
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)