Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_B20
(276 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 (N... 29 3.9
sp|P21951|DPOE_YEAST DNA polymerase epsilon, catalytic subu... 28 8.6
sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homol... 28 8.6
>sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 (Na(+)/K(+)/Ca(2+)-exchange
protein 1) (Retinal rod Na-Ca+K exchanger)
Length = 1181
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 78 NPNLQSSVRPINVGNNFSSAPPGVKRQPSSIEDW*TRLP 194
NP + + + P ++ NN+S G +RQ +I +R P
Sbjct: 113 NPPITTKITPTSLKNNYSPTTAGTRRQKENIPPTPSRAP 151
>sp|P21951|DPOE_YEAST DNA polymerase epsilon, catalytic subunit A (DNA polymerase II
subunit A)
Length = 2222
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 136 LLPVLRGSH-----PVLKIGKLVCHKEIKAFNLILNFVKLACVLIIVFIL 270
++PVL GSH P+L++ K +CH + + + IL L L+ +F L
Sbjct: 2036 VIPVLPGSHLNVKNPLLELVKSLCHVMLLSKSTILEIRTLRKELLKIFEL 2085
>sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homolog (Hypertension related
protein 1-like protein)
Length = 241
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1
Query: 55 RQLLAVTAIPICNHLLGPSM*EIISQALLPVLRGSHPVLKIGK 183
RQ++ VT + + HL+ S E++ +ALLP R P+L I K
Sbjct: 146 RQIICVT-LKVLQHLVVSS--EMVGEALLPYYRQILPILNIFK 185
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,109,473
Number of Sequences: 369166
Number of extensions: 588943
Number of successful extensions: 1711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)