Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_B14-1
(265 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22700|ATC1_DROME Calcium-transporting ATPase sarcoplasm... 68 6e-12
sp|P35316|ATC_ARTSF Calcium-transporting ATPase sarcoplasmi... 50 1e-06
sp|Q9YGL9|AT2A3_CHICK Sarcoplasmic/endoplasmic reticulum ca... 50 1e-06
sp|Q03669|AT2A2_CHICK Sarcoplasmic/endoplasmic reticulum ca... 50 2e-06
sp|P11607|AT2A2_PIG Sarcoplasmic/endoplasmic reticulum calc... 50 2e-06
sp|P11507|AT2A2_RAT Sarcoplasmic/endoplasmic reticulum calc... 50 2e-06
sp|O46674|AT2A2_CANFA Sarcoplasmic/endoplasmic reticulum ca... 50 2e-06
sp|Q00779|AT2A2_FELCA Sarcoplasmic/endoplasmic reticulum ca... 50 2e-06
sp|O55143|AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum ca... 50 2e-06
sp|P20647|AT2A2_RABIT Sarcoplasmic/endoplasmic reticulum ca... 49 3e-06
>sp|P22700|ATC1_DROME Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type
(Calcium pump)
Length = 1020
Score = 68.2 bits (165), Expect = 6e-12
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRNQQNHKSIFNNCHMIVLMWAAF 172
VFQ++PLS EW+TVMKFS PV+LLDE+LK ++R + +S H IVLMWA F
Sbjct: 956 VFQVTPLSAEEWITVMKFSIPVVLLDETLKFVARKIADGESPIYKMHGIVLMWAVF 1011
>sp|P35316|ATC_ARTSF Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type
(Calcium pump)
Length = 1003
Score = 50.4 bits (119), Expect = 1e-06
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISR 106
VFQI PL+ +EW+ V+K SFPVLLLDE LK ++R
Sbjct: 960 VFQICPLTLTEWIVVLKISFPVLLLDEVLKFVAR 993
>sp|Q9YGL9|AT2A3_CHICK Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 (Calcium pump 3)
(SERCA3) (SR Ca(2+)-ATPase 3) (ChkSERCA3)
Length = 1042
Score = 50.4 bits (119), Expect = 1e-06
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQ++PLS+ +W+ V+K S PV+LLDE LK +SRN
Sbjct: 956 IFQVTPLSWPQWVVVLKISLPVILLDEGLKYLSRN 990
>sp|Q03669|AT2A2_CHICK Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (Calcium pump 2)
(SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting
ATPase sarcoplasmic reticulum type, slow twitch skeletal
muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+)
ATPase)
Length = 1041
Score = 50.1 bits (118), Expect = 2e-06
Identities = 20/35 (57%), Positives = 30/35 (85%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQI+PL+ ++WL V+K S PV+LLDE+LK ++RN
Sbjct: 955 IFQITPLNVTQWLMVLKISLPVILLDETLKYVARN 989
>sp|P11607|AT2A2_PIG Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (Calcium pump 2)
(SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting
ATPase sarcoplasmic reticulum type, slow twitch skeletal
muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+)
ATPase)
Length = 1042
Score = 49.7 bits (117), Expect = 2e-06
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQI+PL+ ++WL V+K S PV+L+DE+LK ++RN
Sbjct: 955 IFQITPLNLTQWLMVLKISLPVILMDETLKFVARN 989
>sp|P11507|AT2A2_RAT Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (Calcium pump 2)
(SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting
ATPase sarcoplasmic reticulum type, slow twitch skeletal
muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+)
ATPase)
Length = 1043
Score = 49.7 bits (117), Expect = 2e-06
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQI+PL+ ++WL V+K S PV+L+DE+LK ++RN
Sbjct: 955 IFQITPLNLTQWLMVLKISLPVILMDETLKFVARN 989
>sp|O46674|AT2A2_CANFA Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (Calcium pump 2)
(SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting
ATPase sarcoplasmic reticulum type, slow twitch skeletal
muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+)
ATPase)
Length = 997
Score = 49.7 bits (117), Expect = 2e-06
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQI+PL+ ++WL V+K S PV+L+DE+LK ++RN
Sbjct: 955 IFQITPLNLTQWLMVLKISLPVILMDETLKFVARN 989
>sp|Q00779|AT2A2_FELCA Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (Calcium pump 2)
(SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting
ATPase sarcoplasmic reticulum type, slow twitch skeletal
muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+)
ATPase)
Length = 997
Score = 49.7 bits (117), Expect = 2e-06
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQI+PL+ ++WL V+K S PV+L+DE+LK ++RN
Sbjct: 955 IFQITPLNLTQWLMVLKISLPVILMDETLKFVARN 989
>sp|O55143|AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (Calcium pump 2)
(SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting
ATPase sarcoplasmic reticulum type, slow twitch skeletal
muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+)
ATPase)
Length = 1044
Score = 49.7 bits (117), Expect = 2e-06
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQI+PL+ ++WL V+K S PV+L+DE+LK ++RN
Sbjct: 955 IFQITPLNLTQWLMVLKISLPVILMDETLKFVARN 989
>sp|P20647|AT2A2_RABIT Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (Calcium pump 2)
(SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting
ATPase sarcoplasmic reticulum type, slow twitch skeletal
muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+)
ATPase)
Length = 1042
Score = 49.3 bits (116), Expect = 3e-06
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +2
Query: 5 VFQISPLSFSEWLTVMKFSFPVLLLDESLKVISRN 109
+FQI+PL+ ++WL V+K S PV+L+DE+LK ++RN
Sbjct: 955 IFQITPLNVTQWLMVLKISLPVILMDETLKFVARN 989
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,116,753
Number of Sequences: 369166
Number of extensions: 351830
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)