Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_B06-2
(301 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57057|GLPT_HUMAN Glycerol-3-phosphate transporter (G-3-... 62 5e-10
sp|P77589|MHPT_ECOLI Putative 3-hydroxyphenylpropionic acid... 29 2.9
sp|P34272|YKH4_CAEEL Hypothetical protein C02C2.4 in chromo... 29 3.8
sp|Q892S8|DGT1_CLOTE Deoxyguanosinetriphosphate triphosphoh... 28 4.9
sp|P76230|YDJK_ECOLI Hypothetical metabolite transport prot... 28 8.4
>sp|P57057|GLPT_HUMAN Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P
permease) (Solute carrier family 37 member 1)
Length = 533
Score = 61.6 bits (148), Expect = 5e-10
Identities = 28/44 (63%), Positives = 33/44 (75%)
Frame = +3
Query: 156 VGFLQALLIPGVIEYSMCLFFAKLVSYTFLFWLPTFIKEKGNSD 287
+ F AL IPGVIE+S+CL FAKLVSYTFLFWLP +I + D
Sbjct: 318 ISFTGALKIPGVIEFSLCLLFAKLVSYTFLFWLPLYITNVDHLD 361
>sp|P77589|MHPT_ECOLI Putative 3-hydroxyphenylpropionic acid transporter
Length = 403
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 204 MCLFFAKLVSYTFLFWLPTFIKEKG 278
+C FF LV Y + WLP + E+G
Sbjct: 222 LCYFFTLLVVYMLINWLPLLLVEQG 246
>sp|P34272|YKH4_CAEEL Hypothetical protein C02C2.4 in chromosome III
Length = 568
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 135 QSENQSNVGFLQALLIPGVIEYSMCLFFAKLVSYTFLFWLPTFIKE 272
+SE ++ + + L P + C FF L F +LP++ KE
Sbjct: 308 KSEKTRSIPYSKILTSPAFLGQLQCHFFVNLFMTLFQIYLPSYFKE 353
>sp|Q892S8|DGT1_CLOTE Deoxyguanosinetriphosphate triphosphohydrolase-like protein
Length = 349
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 53 TESIIGEFIEHYRIRIDKSRDTTNIIKTIGKSI 151
T+ I + +HYR R+ + + I KTIGKSI
Sbjct: 66 TQVYIKTWGDHYRTRLTHTLEVAQIGKTIGKSI 98
>sp|P76230|YDJK_ECOLI Hypothetical metabolite transport protein ydjK
Length = 459
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 165 LQALLIPGVIEYSMCLFFAKLVSYTFLFWLPTFIKEKG 278
L +L+ VI S L +V YT + WLPT +G
Sbjct: 258 LTGVLLKRVILGSCVLIAMNVVQYTLINWLPTIFMTQG 295
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,790,525
Number of Sequences: 369166
Number of extensions: 508486
Number of successful extensions: 1188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)