Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_B06-1
(542 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24327|PRSA_BACSU Foldase protein prsA precursor 31 1.7
sp|P52892|ALAT_YEAST Putative alanine aminotransferase (Glu... 30 2.9
sp|O51272|FTSK_BORBU DNA translocase ftsK 30 3.8
sp|Q8K9U9|AKH_BUCAP Bifunctional aspartokinase/homoserine d... 30 4.9
sp|P57189|Y087_BUCAI Hypothetical protein BU087 29 6.5
sp|Q93MD5|YU12_CLOPE Hypothetical protein PCP12 29 8.4
sp|Q975L7|RL14E_SULTO 50S ribosomal protein L14e 29 8.4
sp|Q89AG2|AMPA_BUCBP Probable cytosol aminopeptidase (Leuci... 29 8.4
>sp|P24327|PRSA_BACSU Foldase protein prsA precursor
Length = 292
Score = 31.2 bits (69), Expect = 1.7
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = -1
Query: 467 TNLKKTASQLEIDVMMEEANLFNKMKIIFEEFQSTVKD------DSWEFFNRNYGKAYKF 306
TN+KKTA + +++E L K K+ +E + +K+ D + + YGK Y
Sbjct: 43 TNMKKTAGASVLTQLVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLK 102
Query: 305 SALSIYQFLTK 273
+ Y+ LT+
Sbjct: 103 EQVK-YELLTQ 112
>sp|P52892|ALAT_YEAST Putative alanine aminotransferase (Glutamic--pyruvic transaminase)
(GPT) (Glutamic--alanine transaminase)
Length = 507
Score = 30.4 bits (67), Expect = 2.9
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 92 FVIYFSNQKSFSVQVLPFYYNQESSLQSVNLDQYVKVI 205
+ +Y ++ F+ QVLP+Y ++ES+ S N D+ KV+
Sbjct: 199 YPLYTASASLFNAQVLPYYLDEESN-WSTNSDEIEKVV 235
>sp|O51272|FTSK_BORBU DNA translocase ftsK
Length = 787
Score = 30.0 bits (66), Expect = 3.8
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Frame = -1
Query: 509 LFENVLKQLPFIDKTNLKKTASQLEIDV-MMEEANLFNKMKIIF--EEFQSTVKDDSWEF 339
LFEN+L PF + ++KK V ++++ +F++ K I EE+Q+ W F
Sbjct: 162 LFENILSYFPFSNSLDVKKDIKVYGDSVDDLKDSQVFDEKKNIINDEEYQAL-----WSF 216
Query: 338 --FNRNYGKAYKFSALSIYQFLTKDTLNIIKKLSNCNKEIMGIHCARSLLHIDQGL--LI 171
F RN K + L F D +K+ S+ NK+I+ + L++D+ + +
Sbjct: 217 SAFLRNNKKPSNIN-LDKTIFEGSD----LKEASSLNKDILN----ENALNLDENVDEID 267
Query: 170 EGCSLGY 150
E C Y
Sbjct: 268 ESCEYKY 274
>sp|Q8K9U9|AKH_BUCAP Bifunctional aspartokinase/homoserine dehydrogenase (AK-HD)
[Includes: Aspartokinase ; Homoserine dehydrogenase ]
Length = 814
Score = 29.6 bits (65), Expect = 4.9
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = -1
Query: 536 LTGLSDVNE-LFENVLKQLPFIDKTNLKKTASQLEIDVMMEEANLFNKMKIIFEEFQSTV 360
L G+ V + L + +LKQ F+D+ N+K ++ + N K++F ++++
Sbjct: 469 LIGIGGVGKALLKQILKQEKFLDQKNIK-----------IQFRMIANSKKLLF--LKNSI 515
Query: 359 KDDSWEFFNRNYGKAYKFSALSIYQFLTKDTLNIIKKLSNCNKE 228
++WE N+ K+ + L+I L K+T + + +C +
Sbjct: 516 NLNNWE---ENFKKSKEKFNLTILNELLKNTCDSNSVIIDCTSD 556
>sp|P57189|Y087_BUCAI Hypothetical protein BU087
Length = 970
Score = 29.3 bits (64), Expect = 6.5
Identities = 29/93 (31%), Positives = 38/93 (40%)
Frame = -1
Query: 419 EEANLFNKMKIIFEEFQSTVKDDSWEFFNRNYGKAYKFSALSIYQFLTKDTLNIIKKLSN 240
E+ N+ NK II + FN+ K Y FS S Q LNI K
Sbjct: 188 EKKNILNKSTII-------------KNFNK-IKKIYSFSYFSSNQTKKNFPLNIYLKSLK 233
Query: 239 CNKEIMGIHCARSLLHIDQGLLIEGCSLGYNKM 141
CNK + ++LL ++ IE L NKM
Sbjct: 234 CNKTQFIDYEYKNLLQVELQANIENNILQINKM 266
>sp|Q93MD5|YU12_CLOPE Hypothetical protein PCP12
Length = 161
Score = 28.9 bits (63), Expect = 8.4
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = -1
Query: 524 SDVNELFENVLKQLPFIDKTNLKKTASQL--EIDVMMEEANLFNKMKIIFEEFQSTVKDD 351
++++EL + L++ + +KK +++ E+ V ++E L+ Q+T+
Sbjct: 41 NELSELLKEELEKKKQLTPKEIKKETTEIQHEVSVTVDEDFLY----------QNTINIL 90
Query: 350 SWEFFNRNYGKAYKFSALSIYQFLTKDTLNIIKKLSNCNKEIMGIH 213
+ NR+ +K +SI + ++ L IIK+L +H
Sbjct: 91 QSQIENRDKQIEFKDKQISILNTIIENNLKIIKQLEEKQSSYKNLH 136
>sp|Q975L7|RL14E_SULTO 50S ribosomal protein L14e
Length = 96
Score = 28.9 bits (63), Expect = 8.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 536 LTGLSDVNELFE---NVLKQLPFIDKTNLKKTASQLEIDVMMEEANLFNKMK 390
+TG DVN++ N+L P K ++ K AS E+ +EEA L MK
Sbjct: 35 VTGPKDVNKVKRRRVNILHLEPTDKKIDINKGASDDEVKKKLEEAGLIEFMK 86
>sp|Q89AG2|AMPA_BUCBP Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 501
Score = 28.9 bits (63), Expect = 8.4
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -1
Query: 449 ASQLEIDVMMEEANLFNKMKIIFEEFQSTVKDDSWEFFNRNYGKAYKFSALSIYQFLTKD 270
+ Q+ +++ F K+KI+F GK +F+ +++YQ L K
Sbjct: 53 SGQINESLLLHSIPNFQKLKILF----------------LGCGKKERFN-INLYQKLFKT 95
Query: 269 TLNIIKKLS 243
++NIIKKLS
Sbjct: 96 SINIIKKLS 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,819,194
Number of Sequences: 369166
Number of extensions: 957075
Number of successful extensions: 2662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2662
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)