Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_B03
(742 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial pr... 222 9e-58
sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial pr... 218 1e-56
sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial pr... 218 2e-56
sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial pr... 202 6e-52
sp|P48865|EFTU_RICPR Elongation factor Tu (EF-Tu) 201 2e-51
sp|O50306|EFTU_BACST Elongation factor Tu (EF-Tu) 201 2e-51
sp|P42481|EFTU_THICU Elongation factor Tu (EF-Tu) 199 5e-51
sp|Q8CQ81|EFTU_STAES Elongation factor Tu (EF-Tu) >gi|71151... 199 5e-51
sp|Q5HIC7|EFTU_STAAC Elongation factor Tu (EF-Tu) >gi|54037... 199 6e-51
sp|Q8KT95|EFTU_RICTY Elongation factor Tu (EF-Tu) 199 8e-51
>sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial precursor
Length = 452
Score = 222 bits (565), Expect = 9e-58
Identities = 110/222 (49%), Positives = 158/222 (71%), Gaps = 2/222 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALE ++ E+G + +LL+ +D IP+P R++DKP LPVE V SI GRGTV
Sbjct: 216 IVGSALCALEQRDPELGVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVV 275
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TG +ERG++ G E++G+N +++T +TGIEMF + L++A GD +G L+R +K+E+LR
Sbjct: 276 TGTLERGILKKGDECELLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLR 335
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG+V++ P S+Q + VEAQ+Y+L++ EGGR KP +F ++S +WD ILP GK
Sbjct: 336 RGLVMVKPGSIQPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRVILPPGK 395
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 664
EL MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 396 ELAMPGEDLKLSLILRQPMILEKGQRFTLRDGNKTIGTGLVT 437
>sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial precursor (EF-Tu)
Length = 452
Score = 218 bits (556), Expect = 1e-56
Identities = 110/222 (49%), Positives = 156/222 (70%), Gaps = 2/222 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALE ++ E+G + +LL+ +D IP+P R+++KP LPVE V SI GRGTV
Sbjct: 216 IVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVV 275
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TG +ERG++ G E +G++ +++T +TGIEMF + LD+A GD +G L+R +K+E+LR
Sbjct: 276 TGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLR 335
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG+V+ P S+Q + VEAQ+Y+LT+ EGGR KP +F ++S +WD ILP GK
Sbjct: 336 RGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGK 395
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 664
EL MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 396 ELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVT 437
>sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial precursor (EF-Tu) (P43)
Length = 452
Score = 218 bits (554), Expect = 2e-56
Identities = 108/225 (48%), Positives = 159/225 (70%), Gaps = 2/225 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALEG++ E+G + +LL+ +D IP+PAR+++KP LPVE V S+ GRGTV
Sbjct: 216 IVGSALCALEGRDPELGLKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVV 275
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TG +ERG++ G E++G++ +++T +TGIEMF + L++A GD +G L+R +K+E+LR
Sbjct: 276 TGTLERGILKKGDECELLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLR 335
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG+V++ P S++ + VEAQ+Y+L++ EGGR KP +F ++S +WD ILP K
Sbjct: 336 RGLVMVKPGSIKPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPEK 395
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVTKLL 673
EL MPGED L L++ M+LE GQRFTLR G T+G G+VT L
Sbjct: 396 ELAMPGEDLKFNLILRQPMILEKGQRFTLRDGNRTIGTGLVTNTL 440
>sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial precursor
Length = 454
Score = 202 bits (515), Expect = 6e-52
Identities = 106/228 (46%), Positives = 154/228 (67%), Gaps = 5/228 (2%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL AL+G N+EIG+ I++L++ +DE IP P R +DKP +P+E V SI GRGTV
Sbjct: 226 IRGSALSALQGTNDEIGRQAILKLMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVA 285
Query: 182 TGRVERGVINLGLAVEIIGYNAS---VKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKE 352
TGR+E+GVI +G VEI+G +K+T+TG+EMF+++LD GD VG+LLR +K+E
Sbjct: 286 TGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKRE 345
Query: 353 ELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILP 532
+++RGMVI P S + Y EA+IY+LT+ EGGR N++ Q Y ++ D LP
Sbjct: 346 DIQRGMVIAKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELP 405
Query: 533 EGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 673
E +++MPG++ + L + LE GQRF LR G T+G GVV+K++
Sbjct: 406 ENVKMVMPGDNVTAVFELIMPVPLETGQRFALREGGRTVGAGVVSKVM 453
>sp|P48865|EFTU_RICPR Elongation factor Tu (EF-Tu)
Length = 394
Score = 201 bits (510), Expect = 2e-51
Identities = 102/224 (45%), Positives = 152/224 (67%), Gaps = 2/224 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALEGK E G+ I EL+N +D IP P R DKP +P+E V SI+GRGTV
Sbjct: 171 IKGSALQALEGKPE--GEKAINELMNAVDSYIPQPIRATDKPFLMPIEDVFSISGRGTVV 228
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TGRVE G+I +G +EI+G + KTT TG+EMFR+LLD+ GD VG+LLR K+EE+
Sbjct: 229 TGRVESGIIKVGEEIEIVGLKNTQKTTCTGVEMFRKLLDEGQSGDNVGILLRGTKREEVE 288
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG V+ P S++ ++ EA++Y+L++ EGGR P T +++ Q Y ++ D LP K
Sbjct: 289 RGQVLAKPGSIKPHDKFEAEVYVLSKEEGGRHTPFTNDYRPQFYFRTTDVTGTIKLPSDK 348
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 670
+++MPG++++ + L K + ++ G +F++R G T+G G+VTK+
Sbjct: 349 QMVMPGDNATFSVELIKPIAMQEGLKFSIREGGRTVGAGIVTKI 392
>sp|O50306|EFTU_BACST Elongation factor Tu (EF-Tu)
Length = 395
Score = 201 bits (510), Expect = 2e-51
Identities = 106/226 (46%), Positives = 152/226 (67%), Gaps = 3/226 (1%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALEG + + KIIEL+N +DE IP P RE+DKP +P+E V SITGRGTV
Sbjct: 171 IKGSALKALEGDPK--WEEKIIELMNAVDEYIPTPQREVDKPFMMPIEDVFSITGRGTVA 228
Query: 182 TGRVERGVINLGLAVEIIGYNASVK-TTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEEL 358
TGRVERG + +G VEIIG + K TT+TG+EMFR+LLD+A GD +G LLR V ++E+
Sbjct: 229 TGRVERGTLKVGDPVEIIGLSDEPKATTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEV 288
Query: 359 RRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEG 538
RG V+ P S+ + +AQ+Y+LT+ EGGR P N++ Q Y ++ D LPEG
Sbjct: 289 ERGQVLAKPGSITPHTKFKAQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIITLPEG 348
Query: 539 KELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 673
E++MPG++ + + L + +E G +F++R G T+G G V++++
Sbjct: 349 VEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEII 394
>sp|P42481|EFTU_THICU Elongation factor Tu (EF-Tu)
Length = 396
Score = 199 bits (507), Expect = 5e-51
Identities = 101/225 (44%), Positives = 149/225 (66%), Gaps = 2/225 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSA LALEG E+G+ I++L +D IP P R +D +PVE V SI+GRGTV
Sbjct: 171 IKGSAKLALEGDKGELGEGAILKLAEALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVV 230
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TGRVERG+I +G +EI+G ++KTT TG+EMFR+LLD+ GD VG+LLR K+EE+
Sbjct: 231 TGRVERGIIKVGEEIEIVGLKPTLKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVE 290
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG V+ P S++ + + A++Y+L++ EGGR P N++ Q Y ++ D LP+ K
Sbjct: 291 RGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDK 350
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 673
E++MPG++ S+ + L + +E G RF +R G T+G GVV K++
Sbjct: 351 EMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKII 395
>sp|Q8CQ81|EFTU_STAES Elongation factor Tu (EF-Tu)
sp|Q5HRK4|EFTU_STAEQ Elongation factor Tu (EF-Tu)
Length = 394
Score = 199 bits (507), Expect = 5e-51
Identities = 105/224 (46%), Positives = 152/224 (67%), Gaps = 2/224 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALEG E + KI++L+ +D+ IP P R+ DKP +PVE V SITGRGTV
Sbjct: 171 IAGSALKALEGDAEY--EQKILDLMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVA 228
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TGRVERG I +G VEIIG + + KTT+TG+EMFR+LLD A GD +G LLR V +E+++
Sbjct: 229 TGRVERGQIKVGEEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQ 288
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG V+ +P S+ + +A++Y+L++ EGGR P N++ Q Y ++ D LPEG
Sbjct: 289 RGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFTNYRPQFYFRTTDVTGVVNLPEGT 348
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 670
E++MPG++ + + L + +E G RF++R G T+G GVVT++
Sbjct: 349 EMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEI 392
>sp|Q5HIC7|EFTU_STAAC Elongation factor Tu (EF-Tu)
sp|P64029|EFTU_STAAW Elongation factor Tu (EF-Tu)
sp|Q6GBT9|EFTU_STAAS Elongation factor Tu (EF-Tu)
sp|Q6GJC0|EFTU_STAAR Elongation factor Tu (EF-Tu)
sp|P99152|EFTU_STAAN Elongation factor Tu (EF-Tu)
sp|P64028|EFTU_STAAM Elongation factor Tu (EF-Tu)
Length = 394
Score = 199 bits (506), Expect = 6e-51
Identities = 105/225 (46%), Positives = 152/225 (67%), Gaps = 2/225 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALEG + + KI+EL+ +D IP P R+ DKP +PVE V SITGRGTV
Sbjct: 171 IAGSALKALEGDAQY--EEKILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVA 228
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TGRVERG I +G VEIIG + + KTT+TG+EMFR+LLD A GD +G LLR V +E+++
Sbjct: 229 TGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQ 288
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG V+ +P S+ + +A++Y+L++ EGGR P N++ Q Y ++ D LPEG
Sbjct: 289 RGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHLPEGT 348
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 673
E++MPG++ + + L + +E G RF++R G T+G GVVT+++
Sbjct: 349 EMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEII 393
>sp|Q8KT95|EFTU_RICTY Elongation factor Tu (EF-Tu)
Length = 394
Score = 199 bits (505), Expect = 8e-51
Identities = 102/224 (45%), Positives = 152/224 (67%), Gaps = 2/224 (0%)
Frame = +2
Query: 5 VTGSALLALEGKNEEIGKNKIIELLNKIDE-IPLPAREIDKPLFLPVEHVLSITGRGTVC 181
+ GSAL ALEGK E G+ I EL+N +D IP P R DKP +P+E V SI+GRGTV
Sbjct: 171 IKGSALQALEGKPE--GEKAINELMNAVDSYIPQPIRATDKPFLMPIEDVFSISGRGTVV 228
Query: 182 TGRVERGVINLGLAVEIIGYNASVKTTITGIEMFRQLLDKAVPGDQVGVLLRSVKKEELR 361
TGRVE G+I +G +EI+G + KTT TG+EMFR+LLD+ GD VG+LLR K+EE+
Sbjct: 229 TGRVESGIIKVGEEIEIVGLKNTQKTTCTGVEMFRKLLDEGQSGDNVGILLRGTKREEVE 288
Query: 362 RGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGK 541
RG V+ P S++ ++ EA++Y+L++ EGGR P T +++ Q Y ++ D LP K
Sbjct: 289 RGQVLAKPGSIKPHDKFEAEVYVLSKEEGGRHTPFTNDYRPQFYFRTTDVTGTIKLPFDK 348
Query: 542 ELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 670
+++MPG++++ + L K + ++ G +F++R G T+G GVVT++
Sbjct: 349 QMVMPGDNATFSVELIKPIAMQEGLKFSIREGGRTVGAGVVTRI 392
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,801,356
Number of Sequences: 369166
Number of extensions: 1900819
Number of successful extensions: 6043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5768
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)