Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_A05
(235 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43852|CALU_HUMAN Calumenin precursor (Crocalbin) (IEF S... 73 2e-13
sp|O35887|CALU_MOUSE Calumenin precursor (Crocalbin) 73 2e-13
sp|O35783|CALU_RAT Calumenin precursor (Crocalbin) (CBP-50) 71 7e-13
sp|Q8BH97|RCN3_MOUSE Reticulocalbin-3 precursor 60 2e-09
sp|Q96D15|RCN3_HUMAN Reticulocalbin-3 precursor (EF-hand ca... 59 4e-09
sp|Q15293|RCN1_HUMAN Reticulocalbin-1 precursor 59 4e-09
sp|Q05186|RCN1_MOUSE Reticulocalbin-1 precursor 58 6e-09
sp|O93434|RCN1_FUGRU Reticulocalbin-1 precursor 57 1e-08
sp|Q62703|RCN2_RAT Reticulocalbin-2 precursor (Calcium-bind... 41 8e-04
sp|Q8BP92|RCN2_MOUSE Reticulocalbin-2 precursor (Taipoxin-a... 41 8e-04
>sp|O43852|CALU_HUMAN Calumenin precursor (Crocalbin) (IEF SSP 9302)
Length = 315
Score = 73.2 bits (178), Expect = 2e-13
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = +1
Query: 1 HVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTRHTE 150
H AE HL+ ++D NKDG LTK EI++KYD+FVGSQATDFG+AL RH E
Sbjct: 265 HAEAEARHLVYESDQNKDGKLTKEEIVDKYDLFVGSQATDFGEALVRHDE 314
>sp|O35887|CALU_MOUSE Calumenin precursor (Crocalbin)
Length = 315
Score = 73.2 bits (178), Expect = 2e-13
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = +1
Query: 1 HVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTRHTE 150
H AE HL+ ++D NKDG LTK EI++KYD+FVGSQATDFG+AL RH E
Sbjct: 265 HAEAEARHLVYESDQNKDGKLTKEEIVDKYDLFVGSQATDFGEALVRHDE 314
>sp|O35783|CALU_RAT Calumenin precursor (Crocalbin) (CBP-50)
Length = 315
Score = 71.2 bits (173), Expect = 7e-13
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +1
Query: 1 HVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTRHTE 150
H AE HL+ ++D +KDG LTK EI++KYD+FVGSQATDFG+AL RH E
Sbjct: 265 HAEAEARHLVYESDQDKDGKLTKEEIVDKYDLFVGSQATDFGEALVRHDE 314
>sp|Q8BH97|RCN3_MOUSE Reticulocalbin-3 precursor
Length = 328
Score = 59.7 bits (143), Expect = 2e-09
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +1
Query: 13 ETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTRH 144
E NHL+ ++D +KDG L+K EIL +++FVGSQAT++G+ LTRH
Sbjct: 281 EANHLLHESDTDKDGRLSKAEILSNWNMFVGSQATNYGEDLTRH 324
>sp|Q96D15|RCN3_HUMAN Reticulocalbin-3 precursor (EF-hand calcium-binding protein RLP49)
Length = 328
Score = 58.9 bits (141), Expect = 4e-09
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +1
Query: 13 ETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTRH 144
E NHL+ ++D +KDG L+K EIL +++FVGSQAT++G+ LTRH
Sbjct: 281 EANHLLHESDTDKDGRLSKAEILGNWNMFVGSQATNYGEDLTRH 324
>sp|Q15293|RCN1_HUMAN Reticulocalbin-1 precursor
Length = 331
Score = 58.9 bits (141), Expect = 4e-09
Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = +1
Query: 1 HVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTR-HTEL 153
H AE HL+ ++D NKD LTK EILE +++FVGSQAT++G+ LT+ H EL
Sbjct: 280 HAQAEARHLVYESDKNKDEKLTKEEILENWNMFVGSQATNYGEDLTKNHDEL 331
>sp|Q05186|RCN1_MOUSE Reticulocalbin-1 precursor
Length = 325
Score = 58.2 bits (139), Expect = 6e-09
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = +1
Query: 1 HVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTR-HTEL 153
H AE HL+ ++D NKD LTK EIL+ +++FVGSQAT++G+ LT+ H EL
Sbjct: 274 HAQAEARHLVYESDKNKDEMLTKEEILDNWNMFVGSQATNYGEDLTKNHDEL 325
>sp|O93434|RCN1_FUGRU Reticulocalbin-1 precursor
Length = 322
Score = 57.4 bits (137), Expect = 1e-08
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = +1
Query: 1 HVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDALTR-HTEL 153
H AE HL+ ++D +KD LTK EIL+ +++FVGSQAT++G+ LTR H EL
Sbjct: 271 HAQAEARHLVYESDKDKDQMLTKEEILDNWNMFVGSQATNYGEDLTRNHDEL 322
>sp|Q62703|RCN2_RAT Reticulocalbin-2 precursor (Calcium-binding protein ERC-55)
(Taipoxin-associated calcium-binding protein 49)
(TCBP-49)
Length = 320
Score = 41.2 bits (95), Expect = 8e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 13 ETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDAL 135
E HL+++ D N D L++ EILE D+F+ S+ATD+G L
Sbjct: 270 EALHLIDEMDLNSDKKLSEEEILENQDLFLTSEATDYGRQL 310
>sp|Q8BP92|RCN2_MOUSE Reticulocalbin-2 precursor (Taipoxin-associated calcium-binding
protein 49) (TCBP-49)
Length = 320
Score = 41.2 bits (95), Expect = 8e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +1
Query: 13 ETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQATDFGDAL 135
E HL+++ D N D L++ EILE D+F+ S+ATD+G L
Sbjct: 270 EALHLIDEMDLNSDKKLSEEEILENQDLFLTSEATDYGRQL 310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,170,330
Number of Sequences: 369166
Number of extensions: 582369
Number of successful extensions: 1476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)