Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_P15
(831 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08645|RAS3_DROME Ras-like protein 3 (Roughened protein) 286 4e-77
sp|P62836|RAP1A_RAT Ras-related protein Rap-1A (Ras-related... 282 9e-76
sp|P22123|RAPA_DISOM Ras-related protein O-Krev 282 9e-76
sp|P61224|RAP1B_HUMAN Ras-related protein Rap-1b (GTP-bindi... 281 2e-75
sp|Q62636|RAP1B_RAT Ras-related protein Rap-1b (GTP-binding... 281 2e-75
sp|Q94694|RAP1_PHYPO Ras-related protein Rap-1 (Pprap1) 259 5e-69
sp|P18613|RAP1_DICDI Ras-related protein Rap-1 256 4e-68
sp|P03967|RASD_DICDI Ras-like protein rasD (Transforming pr... 213 4e-55
sp|P34729|RAS1_PHYPO Ras-like protein 1 212 9e-55
sp|P61227|RAP2B_RAT Ras-related protein Rap-2b >gi|47117763... 209 8e-54
>sp|P08645|RAS3_DROME Ras-like protein 3 (Roughened protein)
Length = 184
Score = 286 bits (733), Expect = 4e-77
Identities = 144/184 (78%), Positives = 159/184 (86%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M+EYK KSALTVQFVQ IFVEKYDPTIEDSYRKQVEVDG QCMLEILDTAG
Sbjct: 1 MREYKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQFTAMRDLYMKNGQGFVLVYSITAQS+FN+L+DLREQILRVKDTD+VPMVLVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDL 120
Query: 382 EDDRSVGKEQGQVLARKFNCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKDVKKRKKT 561
E++R VGKE G+ LA +FNC+FMETSAK K+NVN+IFYDLVRQINK++P K K +K
Sbjct: 121 EEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQINKKSPEKKQKKPKKSL 180
Query: 562 CNLL 573
C LL
Sbjct: 181 CVLL 184
>sp|P62836|RAP1A_RAT Ras-related protein Rap-1A (Ras-related protein Krev-1)
sp|P62833|RAP1A_BOVIN Ras-related protein Rap-1A (GTP-binding protein smg-p21A)
sp|P62835|RAP1A_MOUSE Ras-related protein Rap-1A (Ras-related protein Krev-1)
sp|P62834|RAP1A_HUMAN Ras-related protein Rap-1A (GTP-binding protein smg-p21A)
(Ras-related protein Krev-1) (C21KG) (G-22K)
Length = 184
Score = 282 bits (721), Expect = 9e-76
Identities = 144/185 (77%), Positives = 162/185 (87%), Gaps = 1/185 (0%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M+EYK KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QCMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQFTAMRDLYMKNGQGF LVYSITAQS+FN+L+DLREQILRVKDT++VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 382 EDDRSVGKEQGQVLARKF-NCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKDVKKRKK 558
ED+R VGKEQGQ LAR++ NC+F+E+SAK+KINVNEIFYDLVRQIN++ P K K +KK
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKK-KPKKK 179
Query: 559 TCNLL 573
+C LL
Sbjct: 180 SCLLL 184
>sp|P22123|RAPA_DISOM Ras-related protein O-Krev
Length = 184
Score = 282 bits (721), Expect = 9e-76
Identities = 144/185 (77%), Positives = 161/185 (87%), Gaps = 1/185 (0%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M+EYK KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD CMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQPCMLEILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQFTAMRDLYMKNGQGF LVYSITAQS+FN+L+DLREQILRVKDT++VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 382 EDDRSVGKEQGQVLARKF-NCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKDVKKRKK 558
ED+R VGKEQGQ LAR++ NC+F+E+SAK+KINVNEIFYDLVRQIN++AP K KK+K
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKAPVEK-CKKKKS 179
Query: 559 TCNLL 573
C LL
Sbjct: 180 QCTLL 184
>sp|P61224|RAP1B_HUMAN Ras-related protein Rap-1b (GTP-binding protein smg p21B)
sp|P61223|RAP1B_BOVIN Ras-related protein Rap-1b (GTP-binding protein smg p21B)
sp|Q99JI6|RAP1B_MOUSE Ras-related protein Rap-1b (GTP-binding protein smg p21B)
Length = 184
Score = 281 bits (719), Expect = 2e-75
Identities = 143/185 (77%), Positives = 160/185 (86%), Gaps = 1/185 (0%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M+EYK KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QCMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQFTAMRDLYMKNGQGF LVYSITAQS+FN+L+DLREQILRVKDTD+VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 382 EDDRSVGKEQGQVLARKF-NCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKDVKKRKK 558
ED+R VGKEQGQ LAR++ NC+F+E+SAK+KINVNEIFYDLVRQIN++ P +K K
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARK-KS 179
Query: 559 TCNLL 573
+C LL
Sbjct: 180 SCQLL 184
>sp|Q62636|RAP1B_RAT Ras-related protein Rap-1b (GTP-binding protein smg p21B)
Length = 184
Score = 281 bits (719), Expect = 2e-75
Identities = 143/185 (77%), Positives = 160/185 (86%), Gaps = 1/185 (0%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M+EYK KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QCMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQFTAMRDLYMKNGQGF LVYSITAQS+FN+L+DLREQILRVKDTD+VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 382 EDDRSVGKEQGQVLARKF-NCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKDVKKRKK 558
ED+R VGKEQGQ LAR++ NC+F+E+SAK+KINVNEIFYDLVRQIN++ P +K K
Sbjct: 121 EDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARK-KS 179
Query: 559 TCNLL 573
+C LL
Sbjct: 180 SCQLL 184
>sp|Q94694|RAP1_PHYPO Ras-related protein Rap-1 (Pprap1)
Length = 188
Score = 259 bits (663), Expect = 5e-69
Identities = 131/179 (73%), Positives = 148/179 (82%), Gaps = 1/179 (0%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
++E+K KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDG QCMLEILDTAG
Sbjct: 3 LREFKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 62
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQFTAMRDLYMKNGQGFVLVYSI A S+FN+L DLREQILRVKD D+VPMVLVGNKCDL
Sbjct: 63 TEQFTAMRDLYMKNGQGFVLVYSIIAMSTFNDLPDLREQILRVKDCDDVPMVLVGNKCDL 122
Query: 382 EDDRSVGKEQGQVLARKF-NCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKDVKKRK 555
+ R + EQG LARKF C+F+E SAKNKINV +IFYDL+RQIN++ P + K++K
Sbjct: 123 AEQRVISTEQGDELARKFGGCAFLEASAKNKINVEQIFYDLIRQINRKNPGPTNKKEKK 181
>sp|P18613|RAP1_DICDI Ras-related protein Rap-1
Length = 186
Score = 256 bits (655), Expect = 4e-68
Identities = 131/185 (70%), Positives = 150/185 (81%), Gaps = 1/185 (0%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
++E+K KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD +QCMLEILDTAG
Sbjct: 3 LREFKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDSNQCMLEILDTAG 62
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQFTAMRDLYMKNGQGFVLVYSI + S+FNEL DLREQILRVKD ++VPMVLVGNKCDL
Sbjct: 63 TEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDL 122
Query: 382 EDDRSVGKEQGQVLARKF-NCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKDVKKRKK 558
D R + EQG+ LARKF +C F+E SAKNK+NV +IFY+L+RQIN++ P K + K
Sbjct: 123 HDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINRKNPVGPPSKAKSK 182
Query: 559 TCNLL 573
C LL
Sbjct: 183 -CALL 186
>sp|P03967|RASD_DICDI Ras-like protein rasD (Transforming protein P23)
Length = 187
Score = 213 bits (543), Expect = 4e-55
Identities = 104/187 (55%), Positives = 137/187 (73%), Gaps = 3/187 (1%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M EYK KSALT+Q +Q F+++YDPTIEDSYRKQV +D C+L+ILDTAG
Sbjct: 1 MTEYKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQVSIDDETCLLDILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
E+++AMRD YM+ GQGF+ VYSIT++SS++E+ REQILRVKD D VP++LVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADL 120
Query: 382 EDDRSVGKEQGQVLARKFNCSFMETSAKNKINVNEIFYDLVRQINKQA---PTSKDVKKR 552
+ +R V +GQ LA+ FNC FME+SAK++INV E FY LVR+I K+ +S +K+
Sbjct: 121 DHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIRKELKGDQSSGKAQKK 180
Query: 553 KKTCNLL 573
KK C +L
Sbjct: 181 KKQCLIL 187
>sp|P34729|RAS1_PHYPO Ras-like protein 1
Length = 189
Score = 212 bits (540), Expect = 9e-55
Identities = 102/170 (60%), Positives = 128/170 (75%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M EYK KSALT+Q +Q F+++YDPTIEDSYRKQV +D C+L+ILDTAG
Sbjct: 1 MTEYKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQVTIDEETCLLDILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
E+++AMRD YM+ GQGF+ VYSIT++SSF+E+ REQILRVKD D VPM++VGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDL 120
Query: 382 EDDRSVGKEQGQVLARKFNCSFMETSAKNKINVNEIFYDLVRQINKQAPT 531
E +R V +GQ LAR F C FMETSAK+++NV E FY LVR+I K + T
Sbjct: 121 EGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIRKDSRT 170
>sp|P61227|RAP2B_RAT Ras-related protein Rap-2b
sp|P61226|RAP2B_MOUSE Ras-related protein Rap-2b
sp|P61225|RAP2B_HUMAN Ras-related protein Rap-2b
Length = 183
Score = 209 bits (532), Expect = 8e-54
Identities = 102/173 (58%), Positives = 132/173 (76%)
Frame = +1
Query: 22 MKEYKXXXXXXXXXXKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGSQCMLEILDTAG 201
M+EYK KSALTVQFV G F+EKYDPTIED YRK++EVD S +LEILDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 202 TEQFTAMRDLYMKNGQGFVLVYSITAQSSFNELEDLREQILRVKDTDNVPMVLVGNKCDL 381
TEQF +MRDLY+KNGQGF+LVYS+ Q SF +++ +R+QI+RVK + VPM+LVGNK DL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL 120
Query: 382 EDDRSVGKEQGQVLARKFNCSFMETSAKNKINVNEIFYDLVRQINKQAPTSKD 540
E +R V +G+ LA +++C FMETSAKNK +V+E+F ++VRQ+N A + D
Sbjct: 121 EGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGD 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,637,466
Number of Sequences: 369166
Number of extensions: 1770239
Number of successful extensions: 5508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5077
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)