Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_P04
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13729|SGS3_DROSI Salivary glue protein SGS-3 precursor 38 0.028
sp|Q8BP27|CJ078_MOUSE Protein C10orf78 homolog 34 0.31
sp|Q86YZ3|HORN_HUMAN Hornerin 34 0.41
sp|Q9P889|CREA_ASPOR DNA-binding protein creA (Carbon catab... 34 0.41
sp|P48745|NOV_HUMAN NOV protein homolog precursor (NovH) (N... 33 0.69
sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 (F-box and... 33 0.90
sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 (F-box an... 32 1.2
sp|Q9H3P2|NELFA_HUMAN Negative elongation factor A (NELF-A)... 32 1.2
sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 (F-box an... 32 1.2
sp|Q80U22|RUSC2_MOUSE RUN and SH3 domain containing protein 2 32 1.2
>sp|P13729|SGS3_DROSI Salivary glue protein SGS-3 precursor
Length = 217
Score = 37.7 bits (86), Expect = 0.028
Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 19/106 (17%)
Frame = +3
Query: 6 CPRSTSEGSAPPTSPRSPWPSLTAHTSDNSTGCSATRR*PPVSLPAC------------- 146
CP + APPT P S T T+ +T + T R PP P C
Sbjct: 28 CPTKATTTCAPPTKPTCKSTSTTTTTTTTTTTTTTTTRAPPTK-PTCKSTSTTTTTTRAP 86
Query: 147 PTSPWRRSCS---PTVRT*PICGCRCS---RASHRPSLISCSALAP 266
PT P +S S T R P C+ S +H+P+ S P
Sbjct: 87 PTKPTCKSTSTTTTTTRAPPTTTCKTSTTTTTTHKPTTHSTPKTKP 132
>sp|Q8BP27|CJ078_MOUSE Protein C10orf78 homolog
Length = 319
Score = 34.3 bits (77), Expect = 0.31
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 3 NCPRSTSEGSAPPTSPRSPWPSLTAHTSDNSTGCSATRR*PPVSLPACPTSPWRRSCSPT 182
+ P+ + +PPTSP +P S + S TR PP S P P +P R P+
Sbjct: 25 DAPQPSENPPSPPTSPAAPQTSENPPSPPTSPAVPQTRENPP-SPPTSPAAPQpreNPPS 83
Query: 183 VRT*P 197
T P
Sbjct: 84 PPTSP 88
Score = 31.6 bits (70), Expect = 2.0
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 9 PRSTSEGSAPPTSPRSPWPSLTAHTSDNSTGCSATRR*PPVSLPACPTSPWRRSCSPT 182
P++ +PPTSP +P P + S R PP S P P +P R P+
Sbjct: 59 PQTRENPPSPPTSPAAPQpreNPPSPPTSPAAPQpreNPP-SPPTSPAAPQpreNPPS 115
>sp|Q86YZ3|HORN_HUMAN Hornerin
Length = 2850
Score = 33.9 bits (76), Expect = 0.41
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Frame = -2
Query: 253 EHEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEVGQAG---------SETGGHLRVAEH 101
+HE G+ GH + G+H G+ +G S G H + H
Sbjct: 350 QHESGSGQSSGYSKHGSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQHESASRH 409
Query: 100 PV---ELSDVCAVRDGHGERGEVGGADPSDVERG 8
+ S GHG+RG G PS + G
Sbjct: 410 SSGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHG 443
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Frame = -2
Query: 250 HEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEVGQA---GSETGGHLRVAEHPVELSDV 80
HE S G+ + GH G+H G+ + GS +G R +H
Sbjct: 2110 HESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSRYGQH----GSG 2165
Query: 79 CAVRDGHGERGEVGGADPSDVERG 8
GHG +G G PS G
Sbjct: 2166 SRQSSGHGRQGSGSGHSPSRGRHG 2189
Score = 30.8 bits (68), Expect = 3.4
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 18/109 (16%)
Frame = -2
Query: 280 FPPYRG------ARAEHEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEV---GQAGSET 128
+ PYR +R +E G HR+ + G G+H G GQ GS +
Sbjct: 1024 YGPYRSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTS 1083
Query: 127 GGHLRVAEHPV---------ELSDVCAVRDGHGERGEVGGADPSDVERG 8
G +H + + G+G +G G P +RG
Sbjct: 1084 GQSSSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRG 1132
Score = 30.8 bits (68), Expect = 3.4
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Frame = -2
Query: 250 HEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEVGQA---GSETGGHLRVAEHPVELSDV 80
HE S G+ + GH G+H G+ + GS +G +H
Sbjct: 2580 HESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQH----GSG 2635
Query: 79 CAVRDGHGERGEVGGADPSDVERG 8
GHG +G G PS G
Sbjct: 2636 SRQSSGHGRQGSGSGQSPSRGRHG 2659
Score = 30.4 bits (67), Expect = 4.5
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Frame = -2
Query: 250 HEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEVGQA---GSETGGHLRVAEHPVELSDV 80
HE S G+ + GH G+H G+ + GS +G +H
Sbjct: 1170 HESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQH----GSG 1225
Query: 79 CAVRDGHGERGEVGGADPSDVERG 8
GHG +G G PS G
Sbjct: 1226 SRQSSGHGRQGSGSGHSPSRGRHG 1249
Score = 30.0 bits (66), Expect = 5.9
Identities = 20/81 (24%), Positives = 27/81 (33%)
Frame = -2
Query: 250 HEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEVGQAGSETGGHLRVAEHPVELSDVCAV 71
HE S G+ + GH G+H G+ G G R + +
Sbjct: 1640 HESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQ-SSRGERHGSSSRSSSRYGQHGSGSRQ 1698
Query: 70 RDGHGERGEVGGADPSDVERG 8
GHG +G G PS G
Sbjct: 1699 SSGHGRQGSGSGQSPSRGRHG 1719
Score = 30.0 bits (66), Expect = 5.9
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Frame = -2
Query: 271 YRGARAEHEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEV---GQAGSETGGHLRVAEH 101
+ +R +E G HR+ + G G+H G GQ GS +G +H
Sbjct: 1973 WSSSRGPYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSASGQSSSCGQH 2032
Query: 100 PV---------ELSDVCAVRDGHGERGEVGGADPSDVERG 8
+ + G+G +G G P +RG
Sbjct: 2033 GASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRG 2072
Score = 30.0 bits (66), Expect = 5.9
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Frame = -2
Query: 271 YRGARAEHEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGEV---GQAGSETGGHLRVAEH 101
+ +R +E G HR+ + G G+H G GQ GS +G +H
Sbjct: 2443 WSSSRGPYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQH 2502
Query: 100 PV---------ELSDVCAVRDGHGERGEVGGADPSDVERG 8
+ + G+G +G G P +RG
Sbjct: 2503 GASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRG 2542
Score = 29.6 bits (65), Expect = 7.6
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Frame = -2
Query: 253 EHEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGE---VGQAGSETGGHLRVAEHPVELSD 83
+HE G A GH + G+H G+ Q GS TG +H S
Sbjct: 1756 QHESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQ 1815
Query: 82 VCAVRDGHGERGEVGGADPSDVERG 8
+G++G G PS G
Sbjct: 1816 ----SSSYGQQGSGSGQSPSRGRHG 1836
Score = 29.6 bits (65), Expect = 7.6
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Frame = -2
Query: 253 EHEMSEGRCEAREHRQPQIGHVRTVGEHDRLQGE---VGQAGSETGGHLRVAEHPVELSD 83
+HE G A GH + G+H G+ Q GS TG +H S
Sbjct: 2226 QHESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQ 2285
Query: 82 VCAVRDGHGERGEVGGADPSDVERG 8
+G++G G PS G
Sbjct: 2286 ----SSSYGQQGSGSGQSPSRGRHG 2306
>sp|Q9P889|CREA_ASPOR DNA-binding protein creA (Carbon catabolite repressor)
Length = 429
Score = 33.9 bits (76), Expect = 0.41
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 9 PRSTSEGSAPPTS-PRSPWPSLTAHTSDNSTGCSATRR*PPVSLPACPTSPWRRSCSPTV 185
P++ GSAP T S PS + T NST S+ PP+ A P + R P
Sbjct: 16 PQNNETGSAPSTPVDSSKAPSTPSSTQSNSTMASSVSLLPPLMKGARPATEEARQDLPRP 75
Query: 186 RT*PICGCRCSRASHR 233
P+ C RA HR
Sbjct: 76 YKCPL----CDRAFHR 87
>sp|P48745|NOV_HUMAN NOV protein homolog precursor (NovH) (Nephroblastoma overexpressed
gene protein homolog)
Length = 357
Score = 33.1 bits (74), Expect = 0.69
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +3
Query: 105 SATRR*PPVSLPACPTSPWRRSCSPTVRT*PICGCRCSRASHRPSLISCSALAP 266
+AT+R PP CP +P +C+P VR + GC C R SCS L P
Sbjct: 30 AATQRCPPQCPGRCPATP--PTCAPGVRA-VLDGCSCCLVCARQRGESCSDLEP 80
>sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat protein
7) (F-box protein FBL6/FBL7)
Length = 491
Score = 32.7 bits (73), Expect = 0.90
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 158 LETVVLTNCPHVTDLWLPVLARFAPTLTHLVLSSCSSIRGE 280
LETV ++ C +TD L +A+ P L L +S C +I E
Sbjct: 188 LETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNE 228
>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat protein
20) (F-box/LRR-repeat protein 2-like)
Length = 436
Score = 32.3 bits (72), Expect = 1.2
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = +2
Query: 158 LETVVLTNCPHVTDLWLPVLARFAPTLTHLVLSSCSSIRGEXXXXXXXXXXXXXXXWLDL 337
L+++ + C ++TD L L + P L L ++ CS + L+
Sbjct: 249 LQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLE- 307
Query: 338 THLECVDTGQICQLLLGNHFPKLQVAWISLNAAE---ESRFRSLANGA 472
ECV + L H P+LQV +SL+ E + R L NGA
Sbjct: 308 ---ECVQITDSTLIQLSIHCPRLQV--LSLSHCELITDDGIRHLGNGA 350
>sp|Q9H3P2|NELFA_HUMAN Negative elongation factor A (NELF-A) (Wolf-Hirshhorn syndrome
candidate 2 protein)
Length = 549
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +3
Query: 15 STSEGSAPPTSPRSPWPSLTAHTSDN----STGCSATRR*PPVSLPACPTSPWRRSCSPT 182
S+ E S PP P +P P+L A ++G S P PA PTSP + P
Sbjct: 369 SSREASRPPEEPSAPSPTLPAQFKQRAPMYNSGLS-----PATPTPAAPTSPLTPTTPPA 423
Query: 183 V 185
V
Sbjct: 424 V 424
>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat protein
20) (F-box/LRR-repeat protein 2-like)
Length = 436
Score = 32.3 bits (72), Expect = 1.2
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = +2
Query: 158 LETVVLTNCPHVTDLWLPVLARFAPTLTHLVLSSCSSIRGEXXXXXXXXXXXXXXXWLDL 337
L+++ + C ++TD L L + P L L ++ CS + L+
Sbjct: 249 LQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLE- 307
Query: 338 THLECVDTGQICQLLLGNHFPKLQVAWISLNAAE---ESRFRSLANGA 472
ECV + L H P+LQV +SL+ E + R L NGA
Sbjct: 308 ---ECVQITDSTLIQLSIHCPRLQV--LSLSHCELITDDGIRHLGNGA 350
>sp|Q80U22|RUSC2_MOUSE RUN and SH3 domain containing protein 2
Length = 1514
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +3
Query: 12 RSTSEGSAPPTSPRSPWPSLTAHTSDNSTGCSATRR*PPVSLPACPTSPWRRSCSPTVR 188
R + GS P P+ S T S ST CS P A SPW +C PTVR
Sbjct: 768 RPSPLGSYSPVRSAGPFGSST--DSSASTSCSPP---PEQGTAADSVSPWSHTCPPTVR 821
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,722,479
Number of Sequences: 369166
Number of extensions: 1875926
Number of successful extensions: 6218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6197
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)