Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_P02
(194 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 40 0.001
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 37 0.019
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 33 0.16
sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precurs... 32 0.60
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 30 1.7
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 30 2.3
sp|Q58344|Y934_METJA Hypothetical polyferredoxin-like prote... 29 3.9
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 3 CPKSCHLCGDCADSRPDCAFLKERGDCDKMD-DRV---CRKTCGGC 128
CPK+C+ C C D+ C RG C K D D+V C K+C C
Sbjct: 134 CPKTCNACNICEDANKMCPIWVPRGFCSKFDHDKVQKSCAKSCNIC 179
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 36.6 bits (83), Expect = 0.019
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Frame = +3
Query: 3 CPKSCHLC------GDCADSRPDCAFLKERGDC--DKMDDRVCRKTCGGC 128
C SC +C G CAD DCA RG+C +K CR++C C
Sbjct: 608 CKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTC 657
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Frame = +3
Query: 3 CPKSCHLCG-------DCADSRPDCAFLKERGDCDKMD---DRVCRKTCGGC 128
C SC C +C+D +CA G+C+K CR +C C
Sbjct: 489 CKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKC 540
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Frame = +3
Query: 3 CPKSCHLCG--------DCADSRPDCAFLKERGDCDKM------DDRVCRKTCGGC 128
CPK+C CG C DS +CA ++ G C + C KTC C
Sbjct: 95 CPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
Length = 527
Score = 31.6 bits (70), Expect = 0.60
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +3
Query: 27 GDCADSRPDCAFLKERGDCD-----KMDDRVCRKTCGGC 128
G C D R DC FL G C+ + C +CG C
Sbjct: 443 GKCEDRRKDCEFLARAGHCESRFSIRFMTENCANSCGKC 481
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 3 CPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 125
CP CH G C D R +C E DC ++ C C G
Sbjct: 377 CPSDCHNRGRCLDGRCECDDGFEGEDCGELR---CPGGCSG 414
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Frame = +3
Query: 3 CPKSCHLCGDCADSR---------PDCAFLKERGDCD 86
CP +CHL G C D + DC+ L DC+
Sbjct: 190 CPSNCHLRGQCVDGQCVCNEGFTGEDCSQLACPSDCN 226
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 3 CPKSCHLCGDCADSRPDCAFLKERGDCDKM 92
CP CH G C R +C + DC +M
Sbjct: 439 CPNDCHGRGRCVQGRCECEHGFQGYDCSEM 468
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 3 CPKSCHLCGDCADSRPDCAFLKERGDCDKMDDRVCRKTCGG 125
CP CH G C D R +C DC ++ C C G
Sbjct: 377 CPADCHNRGRCVDGRCECDDGFTGADCGELK---CPNGCSG 414
>sp|Q58344|Y934_METJA Hypothetical polyferredoxin-like protein MJ0934
Length = 209
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 15 CHLCGDCADSRPDCAFLKERG--DCDKMDDRVCRKTCGGC 128
C +CG C D P+ A +K+R D DK C K CG C
Sbjct: 72 CSVCGTCVDVCPNNAIIKDRFTIDADK-----CTK-CGVC 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,390,462
Number of Sequences: 369166
Number of extensions: 288047
Number of successful extensions: 1061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 68,354,980
effective HSP length: 36
effective length of database: 61,704,520
effective search space used: 1727726560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)