Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_P01
(256 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24049|RL17_RAT 60S ribosomal protein L17 (L23) (Amino a... 78 7e-15
sp|P18621|RL17_HUMAN 60S ribosomal protein L17 (L23) 78 7e-15
sp|Q9CPR4|RL17_MOUSE 60S ribosomal protein L17 (L23) 78 7e-15
sp|P37380|RL17_PODCA 60S ribosomal protein L17 (L23) 76 3e-14
sp|Q9HE25|RL17_NEUCR 60S ribosomal protein L17 70 1e-12
sp|O48557|RL17_MAIZE 60S ribosomal protein L17 68 6e-12
sp|P35267|RL172_HORVU 60S ribosomal protein L17-2 67 1e-11
sp|P35266|RL171_HORVU 60S ribosomal protein L17-1 67 1e-11
sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 67 1e-11
sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 67 1e-11
>sp|P24049|RL17_RAT 60S ribosomal protein L17 (L23) (Amino acid starvation-induced
protein) (ASI)
Length = 184
Score = 77.8 bits (190), Expect = 7e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D LVIEHIQVN+AP+MRRRTYRAHGRIN YMSSPCH+++IL
Sbjct: 110 DSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMIL 150
>sp|P18621|RL17_HUMAN 60S ribosomal protein L17 (L23)
Length = 184
Score = 77.8 bits (190), Expect = 7e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D LVIEHIQVN+AP+MRRRTYRAHGRIN YMSSPCH+++IL
Sbjct: 110 DSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMIL 150
>sp|Q9CPR4|RL17_MOUSE 60S ribosomal protein L17 (L23)
Length = 184
Score = 77.8 bits (190), Expect = 7e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D LVIEHIQVN+AP+MRRRTYRAHGRIN YMSSPCH+++IL
Sbjct: 110 DSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMIL 150
>sp|P37380|RL17_PODCA 60S ribosomal protein L17 (L23)
Length = 183
Score = 75.9 bits (185), Expect = 3e-14
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D LVI+HIQVNRAP MRRRTYRAHGRIN YMSSPCH+++I+
Sbjct: 110 DSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIV 150
>sp|Q9HE25|RL17_NEUCR 60S ribosomal protein L17
Length = 186
Score = 70.1 bits (170), Expect = 1e-12
Identities = 29/39 (74%), Positives = 37/39 (94%)
Frame = -2
Query: 249 LVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
LV++HIQVN+AP+ RRRTYRAHGRIN YMS+PCH+++IL
Sbjct: 112 LVVKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELIL 150
>sp|O48557|RL17_MAIZE 60S ribosomal protein L17
Length = 171
Score = 68.2 bits (165), Expect = 6e-12
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D L + HIQVN+A + RRRTYRAHGRIN YMSSPCH+++IL
Sbjct: 111 DNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>sp|P35267|RL172_HORVU 60S ribosomal protein L17-2
Length = 172
Score = 67.4 bits (163), Expect = 1e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D L I HIQVN+A + RRRTYRAHGRIN YMS+PCH+++IL
Sbjct: 111 DNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELIL 151
>sp|P35266|RL171_HORVU 60S ribosomal protein L17-1
Length = 170
Score = 67.0 bits (162), Expect = 1e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D L I HIQVN+A + RRRTYRAHGRIN YMS+PCH+++IL
Sbjct: 111 DALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELIL 151
>sp|P51413|RL172_ARATH 60S ribosomal protein L17-2
Length = 175
Score = 67.0 bits (162), Expect = 1e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D L I HIQVN+A + RRRTYRAHGRIN YMS+PCH+++IL
Sbjct: 111 DALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELIL 151
>sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1
Length = 176
Score = 67.0 bits (162), Expect = 1e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = -2
Query: 255 DQLVIEHIQVNRAPQMRRRTYRAHGRINGYMSSPCHVQVIL 133
D L I HIQVN+A + RRRTYRAHGRIN YMS+PCH+++IL
Sbjct: 111 DALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELIL 151
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,519,754
Number of Sequences: 369166
Number of extensions: 292253
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 68,354,980
effective HSP length: 55
effective length of database: 58,194,555
effective search space used: 1687642095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)