Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N23
(344 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondri... 154 5e-38
sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondria... 153 1e-37
sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondri... 152 2e-37
sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondri... 151 4e-37
sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial... 151 5e-37
sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondri... 150 1e-36
sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein ho... 147 1e-35
sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precu... 122 3e-28
sp|O74261|HSP60_CANAL Heat shock protein 60, mitochondrial ... 119 3e-27
sp|Q7TTY9|CH603_RHOBA 60 kDa chaperonin 3 (Protein Cpn60 3)... 119 3e-27
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 154 bits (390), Expect = 5e-38
Identities = 72/114 (63%), Positives = 99/114 (86%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AED+DGEAL+ LV+NRLK+GLQV AVKAPGFGDNRK+TL DMA ++GGIVFGD+AD
Sbjct: 268 VIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKSTLTDMAIASGGIVFGDDADL 327
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
K+E+V++ DLG+ E++ITKDDTL++KGKG + D+ +R ++I+D+I +TSEY
Sbjct: 328 VKLEDVKVSDLGQVGEVVITKDDTLLLKGKGKKDDVLRRANQIKDQIEDTTSEY 381
>sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondrial precursor (Heat shock
protein 60) (HSP-60)
Length = 568
Score = 153 bits (387), Expect = 1e-37
Identities = 72/114 (63%), Positives = 94/114 (82%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AEDVDGEALT LVLNRLK+GLQV A+KAPGFGDNRKNTL+DM +TG +FGD+++
Sbjct: 263 VIIAEDVDGEALTTLVLNRLKVGLQVVAIKAPGFGDNRKNTLKDMGIATGATIFGDDSNL 322
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
KIE++ +DLG E+ ITKDDTL+++G+G Q +I+KRI+ I DEI STS+Y
Sbjct: 323 IKIEDITANDLGEVDEVTITKDDTLLLRGRGDQTEIEKRIEHITDEIEQSTSDY 376
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 152 bits (384), Expect = 2e-37
Identities = 71/114 (62%), Positives = 94/114 (82%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLN 331
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
+E+VQ HDLG+ E+++TKDD +++KGKG + I+KRI EI +++ ++TSEY
Sbjct: 332 LNLEDVQAHDLGKVGEVIVTKDDAMLLKGKGEKAQIEKRIQEITEQLEITTSEY 385
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (P60 lymphocyte
protein) (HuCHA60)
Length = 573
Score = 151 bits (382), Expect = 4e-37
Identities = 72/114 (63%), Positives = 95/114 (83%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E T
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLT 331
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
+E+VQ HDLG+ E+++TKDD +++KGKG + I+KRI EI +++ ++TSEY
Sbjct: 332 LNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEIIEQLDVTTSEY 385
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
Length = 573
Score = 151 bits (381), Expect = 5e-37
Identities = 71/114 (62%), Positives = 94/114 (82%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLN 331
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
+E+VQ HDLG+ E+++TKDD +++KGKG + I+KRI EI +++ ++TSEY
Sbjct: 332 LNLEDVQAHDLGKVGEVIVTKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEY 385
>sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
Length = 573
Score = 150 bits (378), Expect = 1e-36
Identities = 71/114 (62%), Positives = 95/114 (83%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E T
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLT 331
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
+E+VQ HDLG+ E+++TKDD ++++GKG + I+KRI EI +++ ++TSEY
Sbjct: 332 LNLEDVQPHDLGKVGEVIVTKDDAMLLEGKGDKAQIEKRIQEIIEQLDVTTSEY 385
>sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein homolog 2, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 576
Score = 147 bits (370), Expect = 1e-35
Identities = 65/114 (57%), Positives = 95/114 (83%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AED++ EAL+ LV+NRLK+GLQVCAVKAPGFGDNRK L DMA +TGGIVFGDEA+
Sbjct: 272 VIIAEDLEAEALSTLVVNRLKVGLQVCAVKAPGFGDNRKENLMDMAVATGGIVFGDEANM 331
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
++E++++ D GR E++++KDDT+++KGKG + +++KR++ +R+ I STS Y
Sbjct: 332 VRLEDIKMSDFGRVGEVVVSKDDTMLLKGKGQKAEVEKRVEGLREAIKESTSSY 385
>sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precursor (p63)
Length = 569
Score = 122 bits (305), Expect = 3e-28
Identities = 59/114 (51%), Positives = 85/114 (74%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
+I+AED DGE L+ LV+N+LK+GL V AVKAPGFG+ R N L DMA +TGG VF D+ +
Sbjct: 275 VIIAEDYDGEPLSVLVVNKLKIGLPVVAVKAPGFGEYRTNALLDMAAATGG-VFEDDTNL 333
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
++E+ Q G+ E++ITKD TL++KGKG +I++RID+I++E+ +TS Y
Sbjct: 334 VRLEDCQAESFGQVGEVIITKDSTLLLKGKGDPNEIKQRIDQIKEELETATSNY 387
>sp|O74261|HSP60_CANAL Heat shock protein 60, mitochondrial precursor (60 kDa chaperonin)
(Protein Cpn60)
Length = 566
Score = 119 bits (297), Expect = 3e-27
Identities = 62/115 (53%), Positives = 85/115 (73%), Gaps = 1/115 (0%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 181
LI+AEDVDGEAL A +LN+L+ +QVCAVKAPGFGDNRKNTL D+A +GG VF +E D
Sbjct: 264 LIIAEDVDGEALAACILNKLRGQVQVCAVKAPGFGDNRKNTLGDIAILSGGTVFTEELD- 322
Query: 182 YKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIA-LSTSEY 343
K EN + LG A + ITK+DT+++ G+G + +++ R ++IR IA + T+EY
Sbjct: 323 IKPENATIEQLGSAGAVTITKEDTVLLNGEGSKDNLEARCEQIRSVIADVHTTEY 377
>sp|Q7TTY9|CH603_RHOBA 60 kDa chaperonin 3 (Protein Cpn60 3) (groEL protein 3)
Length = 539
Score = 119 bits (297), Expect = 3e-27
Identities = 65/115 (56%), Positives = 84/115 (73%), Gaps = 1/115 (0%)
Frame = +2
Query: 2 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGG-IVFGDEAD 178
LI+AEDVDGEAL LV+NRL+ VCAVKAPG+GD RK + D+A TGG +F EA
Sbjct: 247 LIIAEDVDGEALATLVINRLRGTFTVCAVKAPGYGDRRKAMMEDIAILTGGQAIF--EAL 304
Query: 179 TYKIENVQLHDLGRAQEILITKDDTLVMKGKGLQKDIQKRIDEIRDEIALSTSEY 343
K+E+V L LGRA++I++ KD+T V++G G DI+ RID+IR EI LSTS+Y
Sbjct: 305 GVKLESVDLPQLGRAKKIIVDKDNTTVIEGGGKSADIKARIDQIRREIELSTSDY 359
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,628,098
Number of Sequences: 369166
Number of extensions: 610539
Number of successful extensions: 2797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2538
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)