Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N21
(266 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein ... 117 1e-26
sp|Q71TY3|RS27_RAT 40S ribosomal protein S27 >gi|51316667|s... 117 1e-26
sp|P47904|RS27_XENLA 40S ribosomal protein S27 117 1e-26
sp|P55833|RS27_HOMAM 40S ribosomal protein S27 113 2e-25
sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4 106 2e-23
sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese e... 103 1e-22
sp|O74330|RS27_SCHPO 40S ribosomal protein S27 103 1e-22
sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1 100 8e-22
sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2 100 1e-21
sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B (YS20) (R... 96 3e-20
>sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein
sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like protein
sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like protein
Length = 84
Score = 117 bits (292), Expect = 1e-26
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQ
Sbjct: 6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65
Query: 183 PTGGKARLMEGCSFRKKQN 239
PTGGKARL EGCSFR+KQ+
Sbjct: 66 PTGGKARLTEGCSFRRKQH 84
>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27
sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27
sp|P42677|RS27_HUMAN 40S ribosomal protein S27 (Metallopan-stimulin 1) (MPS-1)
Length = 84
Score = 117 bits (292), Expect = 1e-26
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQ
Sbjct: 6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65
Query: 183 PTGGKARLMEGCSFRKKQN 239
PTGGKARL EGCSFR+KQ+
Sbjct: 66 PTGGKARLTEGCSFRRKQH 84
>sp|P47904|RS27_XENLA 40S ribosomal protein S27
Length = 84
Score = 117 bits (292), Expect = 1e-26
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQ
Sbjct: 6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65
Query: 183 PTGGKARLMEGCSFRKKQN 239
PTGGKARL EGCSFR+KQ+
Sbjct: 66 PTGGKARLTEGCSFRRKQH 84
>sp|P55833|RS27_HOMAM 40S ribosomal protein S27
Length = 84
Score = 113 bits (282), Expect = 2e-25
Identities = 51/79 (64%), Positives = 56/79 (70%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D LHP RLV PNSYFMDVKCPGC KI+T+FSHA +VV C GC LCQ
Sbjct: 6 DLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQ 65
Query: 183 PTGGKARLMEGCSFRKKQN 239
PTGGKA+L +GCSFRKKQN
Sbjct: 66 PTGGKAKLTDGCSFRKKQN 84
>sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4
Length = 84
Score = 106 bits (264), Expect = 2e-23
Identities = 48/77 (62%), Positives = 53/77 (68%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D LHP RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LCQ
Sbjct: 8 DLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQ 67
Query: 183 PTGGKARLMEGCSFRKK 233
PTGGKARL EGCSFRKK
Sbjct: 68 PTGGKARLQEGCSFRKK 84
>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese efficiency related protein 1)
Length = 86
Score = 103 bits (258), Expect = 1e-22
Identities = 47/77 (61%), Positives = 54/77 (70%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D L+P RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C GC LCQ
Sbjct: 8 DLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67
Query: 183 PTGGKARLMEGCSFRKK 233
PTGGKARL EGCSFR+K
Sbjct: 68 PTGGKARLTEGCSFRRK 84
>sp|O74330|RS27_SCHPO 40S ribosomal protein S27
Length = 83
Score = 103 bits (257), Expect = 1e-22
Identities = 46/77 (59%), Positives = 53/77 (68%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D L+P +LV P S+FMDVKCPGC ITT+FSHA +VV+C C LCQ
Sbjct: 6 DLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQ 65
Query: 183 PTGGKARLMEGCSFRKK 233
PTGGKARLMEGCSFR+K
Sbjct: 66 PTGGKARLMEGCSFRRK 82
>sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1
Length = 84
Score = 100 bits (250), Expect = 8e-22
Identities = 46/77 (59%), Positives = 52/77 (67%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D L+P RLV SPNS+FMDVKC GC ITT+FSH+ +VVMC C LC
Sbjct: 8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCT 67
Query: 183 PTGGKARLMEGCSFRKK 233
PTGGKA+L EGCSFRKK
Sbjct: 68 PTGGKAKLTEGCSFRKK 84
>sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2
Length = 86
Score = 100 bits (249), Expect = 1e-21
Identities = 45/77 (58%), Positives = 53/77 (68%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D L+P RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LCQ
Sbjct: 8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQ 67
Query: 183 PTGGKARLMEGCSFRKK 233
PTGGKA+L EGCSFR+K
Sbjct: 68 PTGGKAKLTEGCSFRRK 84
>sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B (YS20) (RP61)
Length = 82
Score = 95.9 bits (237), Expect = 3e-20
Identities = 43/77 (55%), Positives = 49/77 (63%)
Frame = +3
Query: 3 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 182
D LHP LV P SYF+DVKCPGCL ITT+FSHA + V C C+ LC
Sbjct: 6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCT 65
Query: 183 PTGGKARLMEGCSFRKK 233
PTGGKA+L EG SFR+K
Sbjct: 66 PTGGKAKLSEGTSFRRK 82
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,372,071
Number of Sequences: 369166
Number of extensions: 494204
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)