Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N12
(842 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 228 1e-59
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 214 2e-55
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 214 3e-55
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 213 4e-55
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 213 7e-55
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 212 1e-54
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 211 2e-54
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 211 2e-54
sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (C... 211 2e-54
sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor 211 2e-54
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 228 bits (582), Expect = 1e-59
Identities = 115/279 (41%), Positives = 169/279 (60%), Gaps = 2/279 (0%)
Frame = +3
Query: 12 LFVVSHATLHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEAD 191
LF+++ T+ N L ++WK ++ KEY D+ RR IWE+N+++IQ+HNL D
Sbjct: 3 LFILAVLTVGVLGSNDDLWHQWKR---MYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHD 59
Query: 192 LGKHTFTLGLNQFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKT--KLNDDEVDWRKK 365
LG T+TLGLNQF D+T EEF++KYL++ MSR+ +PY+ + D++DWR+
Sbjct: 60 LGLVTYTLGLNQFTDMTFEEFKAKYLTE--MSRASDILSHGVPYEANNRAVPDKIDWRES 117
Query: 366 GVVTPVKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSP 545
G VT VK+Q C + WAF+ TG+ EG+Y +SFSE+QL+DCS +GN+GC GG
Sbjct: 118 GYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLM 177
Query: 546 DNSFNYYKPYGMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEG 725
+N++ Y K +G+ E +YPY ++ +C+YN +A V + V +E+++ V A
Sbjct: 178 ENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARR 237
Query: 726 PLTAIIDASLPSFQFYREGIYNDPTCSKTSPNHAVLIVG 842
P +D F YR GIY TCS NHAVL VG
Sbjct: 238 PAAVAVDVE-SDFMMYRSGIYQSQTCSPLRVNHAVLAVG 275
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 214 bits (545), Expect = 2e-55
Identities = 112/263 (42%), Positives = 157/263 (59%), Gaps = 3/263 (1%)
Frame = +3
Query: 63 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 239
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 240 TNEEFRSKYLSKNL-MSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 416
TNEE K + S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 417 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 593
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 594 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 773
YPY G ++ C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 774 REGIYNDPTCSKTSPNHAVLIVG 842
+G+Y D +C+ + NHAVL VG
Sbjct: 260 SKGVYYDESCNSDNLNHAVLAVG 282
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 214 bits (544), Expect = 3e-55
Identities = 111/263 (42%), Positives = 158/263 (60%), Gaps = 3/263 (1%)
Frame = +3
Query: 63 LNNEWKAFKLLFKKEYE-PIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 239
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 240 TNEEFRSKYLSKNL-MSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 416
T+EE K + +S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 417 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 593
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 594 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 773
YPY G ++ C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 774 REGIYNDPTCSKTSPNHAVLIVG 842
+G+Y D +C+ + NHAVL VG
Sbjct: 260 SKGVYYDESCNSDNLNHAVLAVG 282
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 213 bits (543), Expect = 4e-55
Identities = 113/268 (42%), Positives = 160/268 (59%), Gaps = 2/268 (0%)
Frame = +3
Query: 45 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 224
P + LN +W +K ++ Y +E RR +WE+N++ I+ HN E GKH FT+ +N
Sbjct: 19 PKFDQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMN 78
Query: 225 QFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCN 404
F D+TNEEFR + ++ + + F P ++ VDWR+KG VTPVKNQ C
Sbjct: 79 AFGDMTNEEFR-QVMNGFQNQKHKKGKMFQEPLFAEI-PKSVDWREKGYVTPVKNQGQCG 136
Query: 405 AGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-GM 581
+ WAF+ATG+ EG+ +TG L+S SE+ L+DCS A GN GC GG DN+F Y K G+
Sbjct: 137 SCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGL 196
Query: 582 NNEETYPYFG-IKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLP 758
++EE+YPY G + C Y A+ F+D+ + E + AV+ GP++ IDA
Sbjct: 197 DSEESYPYLGRDTETCNYKPECSAANDTGFVDLPQ-REKALMKAVATLGPISVAIDAGHQ 255
Query: 759 SFQFYREGIYNDPTCSKTSPNHAVLIVG 842
SFQFY+ GIY DP CS +H VL+VG
Sbjct: 256 SFQFYKSGIYFDPDCSSKDLDHGVLVVG 283
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 213 bits (541), Expect = 7e-55
Identities = 117/278 (42%), Positives = 163/278 (58%), Gaps = 3/278 (1%)
Frame = +3
Query: 18 VVSHATLHQPTINAQLNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADL 194
VVS A LH I L+ +W+ +K + K+Y +DE+ RRLIWE+NL++I HNLEA L
Sbjct: 11 VVSFA-LHPEEI---LDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASL 66
Query: 195 GKHTFTLGLNQFADLTNEEFRSKYLSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGV 371
G HT+ L +N D+T+EE K + SRS N +P D +D+RKKG
Sbjct: 67 GVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRKKGY 126
Query: 372 VTPVKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDN 551
VTPVKNQ C + WAF++ G+ EG+ +TG L++ S + L+DC N GC GG N
Sbjct: 127 VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NYGCGGGYMTN 184
Query: 552 SFNYY-KPYGMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGP 728
+F Y + G+++E+ YPY G + C YN A + ++ NE + AV+ GP
Sbjct: 185 AFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGP 244
Query: 729 LTAIIDASLPSFQFYREGIYNDPTCSKTSPNHAVLIVG 842
++ IDASL SFQFY +G+Y D CS + NHAVL VG
Sbjct: 245 VSVAIDASLTSFQFYSKGVYYDENCSSDNVNHAVLAVG 282
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 212 bits (539), Expect = 1e-54
Identities = 109/263 (41%), Positives = 157/263 (59%), Gaps = 3/263 (1%)
Frame = +3
Query: 63 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 239
L+ +W+ +K ++K+Y +DE+ RRLIWE+NL++I HNLEA LG HT+ L +N D+
Sbjct: 23 LDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDM 82
Query: 240 TNEEFRSKYLSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 416
T+EE K + S S+ N +P D +D+RKKG VTPVKNQ C + WA
Sbjct: 83 TSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWA 142
Query: 417 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 593
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 143 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 200
Query: 594 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 773
YPY G + C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 201 AYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 260
Query: 774 REGIYNDPTCSKTSPNHAVLIVG 842
+G+Y D C+ + NHAVL VG
Sbjct: 261 SKGVYYDENCNSDNLNHAVLAVG 283
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 211 bits (537), Expect = 2e-54
Identities = 111/275 (40%), Positives = 161/275 (58%), Gaps = 1/275 (0%)
Frame = +3
Query: 21 VSHATLHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGK 200
++ ATL T + L +W +K + + Y +E RR +WE+N++ I+ HN E GK
Sbjct: 14 IASATL---TFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGK 70
Query: 201 HTFTLGLNQFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTP 380
H+FT+ +N F D+T+EEFR + +R K VDWR+KG VTP
Sbjct: 71 HSFTMAMNAFGDMTSEEFRQ--VMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTP 128
Query: 381 VKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFN 560
VKNQ C + WAF+ATG+ EG+ +TG L+S SE+ L+DCS GN GC GG D +F
Sbjct: 129 VKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 188
Query: 561 YYKPY-GMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTA 737
Y + G+++EE+YPY ++ CKYN +A+ F+D+ + E + AV+ GP++
Sbjct: 189 YVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISV 247
Query: 738 IIDASLPSFQFYREGIYNDPTCSKTSPNHAVLIVG 842
IDA SF FY+EGIY +P CS +H VL+VG
Sbjct: 248 AIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVG 282
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 211 bits (537), Expect = 2e-54
Identities = 112/268 (41%), Positives = 156/268 (58%), Gaps = 2/268 (0%)
Frame = +3
Query: 45 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 224
P + L+ +W +K ++ Y +E RR +WE+N++ I+ HN E GKH FT+ +N
Sbjct: 19 PKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMN 78
Query: 225 QFADLTNEEFRSKY-LSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGC 401
F D+TNEEFR +N R F P L VDWRKKG VTPVKNQ C
Sbjct: 79 AFGDMTNEEFRQMMGCFRNQKFRK--GKVFREPLFLDL-PKSVDWRKKGYVTPVKNQKQC 135
Query: 402 NAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-G 578
+ WAF+ATG+ EG+ +TG L+S SE+ L+DCS GN GC GG +F Y K G
Sbjct: 136 GSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGG 195
Query: 579 MNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLP 758
+++EE+YPY + + CKY + +A+ F VA E + AV+ GP++ +DA
Sbjct: 196 LDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHS 255
Query: 759 SFQFYREGIYNDPTCSKTSPNHAVLIVG 842
SFQFY+ GIY +P CS + +H VL+VG
Sbjct: 256 SFQFYKSGIYFEPDCSSKNLDHGVLVVG 283
>sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (Catlrp-p)
Length = 333
Score = 211 bits (537), Expect = 2e-54
Identities = 113/276 (40%), Positives = 163/276 (59%), Gaps = 1/276 (0%)
Frame = +3
Query: 18 VVSHATLHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLG 197
V S A H P ++A EWK +K + K Y P +E +RR +WEEN+R I+ HN E LG
Sbjct: 14 VASGAQAHDPKLDA----EWKDWKTKYAKSYSP-EEALRRAVWEENMRMIKLHNKENSLG 68
Query: 198 KHTFTLGLNQFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVT 377
K+ FT+ +N+F D T+EEFR N+ + + + + D DWR++G VT
Sbjct: 69 KNNFTMKMNKFGDQTSEEFRKSI--DNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVT 126
Query: 378 PVKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSF 557
PV+NQ C + WAFAA G+ EG+ +TG L S + L+DCS GN GC+ G+ +F
Sbjct: 127 PVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAF 186
Query: 558 NY-YKPYGMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLT 734
Y K G+ E TYPY G C+Y + + A++ ++++ NE+ + AV++ GP++
Sbjct: 187 EYVLKNKGLEAEATYPYEGKDGPCRYRSENASANITDYVNLP-PNELYLWVAVASIGPVS 245
Query: 735 AIIDASLPSFQFYREGIYNDPTCSKTSPNHAVLIVG 842
A IDAS SF+FY GIY +P CS NHAVL+VG
Sbjct: 246 AAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVG 281
>sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor
Length = 334
Score = 211 bits (537), Expect = 2e-54
Identities = 109/268 (40%), Positives = 164/268 (61%), Gaps = 2/268 (0%)
Frame = +3
Query: 45 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 224
P +++ L+ EW+ +K+ + K Y +E ++R++WEE L+ I+ HN E LGK+ FT+ +N
Sbjct: 19 PVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNRENSLGKNGFTMKMN 78
Query: 225 QFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKT-KLNDDEVDWRKKGVVTPVKNQYGC 401
+F D T+EEFR + ++ + + K +M + + VDWRKKG VTPV+ Q C
Sbjct: 79 EFGDQTDEEFRKMMIEISVWTHRE--GKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDC 136
Query: 402 NAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNY-YKPYG 578
+A WAFA TG+ E + QTG L S + L+DCS GN+GC GG N+F Y G
Sbjct: 137 DACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGG 196
Query: 579 MNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLP 758
+ +E TYPY G C+YN + A + F+ + ++ +I + AAV+ GP+TA IDAS
Sbjct: 197 LESEATYPYEGKDGPCRYNPKNSKAEITGFVSLPQSEDI-LMAAVATIGPITAGIDASHE 255
Query: 759 SFQFYREGIYNDPTCSKTSPNHAVLIVG 842
SF+ Y+ GIY++P CS + H VL+VG
Sbjct: 256 SFKNYKGGIYHEPNCSSDTVTHGVLVVG 283
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,262,287
Number of Sequences: 369166
Number of extensions: 1868112
Number of successful extensions: 5481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5104
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)