Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N02
(323 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 69 3e-12
sp|P80534|G3P1_JACOR Glyceraldehyde-3-phosphate dehydrogena... 69 3e-12
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 69 3e-12
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 69 3e-12
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 69 3e-12
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 68 6e-12
sp|P04406|G3P2_HUMAN Glyceraldehyde-3-phosphate dehydrogena... 67 1e-11
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 67 1e-11
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 67 2e-11
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 67 2e-11
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 69.3 bits (168), Expect = 3e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 303 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|P80534|G3P1_JACOR Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 363
Score = 69.3 bits (168), Expect = 3e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 333 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 68.9 bits (167), Expect = 3e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKL+SWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 303 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 68.9 bits (167), Expect = 3e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKL+SWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 292 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 68.9 bits (167), Expect = 3e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKL+SWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 303 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 68.2 bits (165), Expect = 6e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKLVSWYDNE+GYSNRVVDLMVHMASKE
Sbjct: 303 DHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333
>sp|P04406|G3P2_HUMAN Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH)
Length = 335
Score = 67.4 bits (163), Expect = 1e-11
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKL+SWYDNEFGYSNRVVDLM HMASKE
Sbjct: 305 DHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 67.4 bits (163), Expect = 1e-11
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKL+SWYDNEFGYSNRVVDLM HMASKE
Sbjct: 303 DHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 66.6 bits (161), Expect = 2e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
D+FVKLVSWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 303 DNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 66.6 bits (161), Expect = 2e-11
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +2
Query: 2 DHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 94
DHFVKL+SWYDNEFGYSNRVVDLMV+MASKE
Sbjct: 303 DHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,779,677
Number of Sequences: 369166
Number of extensions: 941483
Number of successful extensions: 3443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3436
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)