Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_M21
(366 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25491|MAS5_YEAST Mitochondrial protein import protein M... 54 1e-07
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 52 6e-07
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 52 6e-07
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 49 3e-06
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 49 4e-06
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 44 1e-04
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 44 2e-04
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 44 2e-04
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 44 2e-04
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 42 3e-04
>sp|P25491|MAS5_YEAST Mitochondrial protein import protein MAS5 (Protein YDJ1)
Length = 409
Score = 53.5 bits (127), Expect = 1e-07
Identities = 34/91 (37%), Positives = 46/91 (50%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
G LII+F + FPEN+F E L KL ILPP + ++ +ECVL +DP N
Sbjct: 325 GNLIIKFTIKFPENHFTSEENLKKLEEILPP-RIVPAIPKKATVDECVLADFDPAKYNRT 383
Query: 192 SQDRYHERHHVCESDDERGMPGGAQRDQCAS 284
R + +SD+E G + QCAS
Sbjct: 384 RASRGGANY---DSDEEE---QGGEGVQCAS 408
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 51.6 bits (122), Expect = 6e-07
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
GRLII+F+V FPEN FL +KLS L +LP + D M + E L +DP
Sbjct: 318 GRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDP------ 368
Query: 192 SQDRYHERHHVCESDDERGMPGGAQ 266
+Q+R + DDE GG Q
Sbjct: 369 NQERRRHYNGEAYEDDEHHPRGGVQ 393
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 51.6 bits (122), Expect = 6e-07
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
GRLII+F+V FPEN FL +KLS L +LP + D M + E L +DP
Sbjct: 318 GRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDP------ 368
Query: 192 SQDRYHERHHVCESDDERGMPGGAQ 266
+Q+R + DDE GG Q
Sbjct: 369 NQERRRHYNGEAYEDDEHHPRGGVQ 393
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 49.3 bits (116), Expect = 3e-06
Identities = 32/82 (39%), Positives = 46/82 (56%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
G +IIQF VVFPE +L EKL +L ++LPP Q D+M + E L+ ++P N +
Sbjct: 319 GVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQKVRITDDMDQVE---LKEFNP---NEQ 372
Query: 192 SQDRYHERHHVCESDDERGMPG 257
S ++ E + E DDE G
Sbjct: 373 SWRQHREAY---EEDDEEPRAG 391
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 48.9 bits (115), Expect = 4e-06
Identities = 31/85 (36%), Positives = 44/85 (51%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
G LIIQF V+FPE ++L EKL +L ++LPP Q D+M + E L+ + P N +
Sbjct: 319 GILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITDDMDQVE---LKEFCPNEQNWR 375
Query: 192 SQDRYHERHHVCESDDERGMPGGAQ 266
+H +DE G G Q
Sbjct: 376 -------QHREAYEEDEDGPQAGVQ 393
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 43.9 bits (102), Expect = 1e-04
Identities = 30/90 (33%), Positives = 44/90 (48%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
G L I+F+V FPENN++ +KLS+L +LP ++ + E EE L+ +D G+
Sbjct: 327 GDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNI--IGETEEVELQEFDSTRGSGG 384
Query: 192 SQDRYHERHHVCESDDERGMPGGAQRDQCA 281
Q R +S DE QCA
Sbjct: 385 GQ----RREAYNDSSDEESSSHHGPGVQCA 410
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 43.5 bits (101), Expect = 2e-04
Identities = 30/90 (33%), Positives = 44/90 (48%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
G L I+F+V FPENN++ +KLS+L +LP ++ + E EE L+ +D G+
Sbjct: 327 GDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNV--IGETEEVELQEFDSTRGSGG 384
Query: 192 SQDRYHERHHVCESDDERGMPGGAQRDQCA 281
Q R +S DE QCA
Sbjct: 385 GQ----RREAYNDSSDEESSSHHGPGVQCA 410
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 43.5 bits (101), Expect = 2e-04
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILP-PSQFSSSLDNMKEAEECVLRPYDPRVGNS 188
G+L I F V FP++ L ++ L ++LP PS S + E EE L +D + +
Sbjct: 332 GKLYIHFTVEFPDS--LSPDQTKALEAVLPKPSTAQLSDMEIDECEETTL--HDVNIEDE 387
Query: 189 KSQDRYHERHHVCESDDERGMPGGAQRDQCA 281
+ +R + D++ PGGAQR QCA
Sbjct: 388 MRRKAQAQREAYDDDDEDDDHPGGAQRVQCA 418
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 43.5 bits (101), Expect = 2e-04
Identities = 30/90 (33%), Positives = 44/90 (48%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILPPSQFSSSLDNMKEAEECVLRPYDPRVGNSK 191
G L I+F+V FPENN++ +KLS+L +LP ++ + E EE L+ +D G+
Sbjct: 327 GDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNV--IGETEEVELQEFDSTRGSGG 384
Query: 192 SQDRYHERHHVCESDDERGMPGGAQRDQCA 281
Q R +S DE QCA
Sbjct: 385 GQ----RREAYNDSSDEESSSHHGPGVQCA 410
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 42.4 bits (98), Expect = 3e-04
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 12 GRLIIQFEVVFPENNFLPTEKLSKLRSILP-PSQFSSSLDNMKEAEECVLRPYDPRVGNS 188
G+L I F V FPE+ L ++ + ++LP P++ + S + + EE L +D + +
Sbjct: 333 GKLYIHFTVEFPES--LSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTL--HDVNIEDE 388
Query: 189 KSQDRYHERHHVCESDDERGMPGGAQRDQCA 281
+ +R DDE PGGAQR QCA
Sbjct: 389 MKRKAQAQRE--AYDDDEEDHPGGAQRVQCA 417
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,880,630
Number of Sequences: 369166
Number of extensions: 815087
Number of successful extensions: 2115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2113
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)