Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_M16
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 543 e-154
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 543 e-154
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 542 e-154
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 542 e-154
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 542 e-154
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 541 e-154
sp|P52273|TBA_BOMMO Tubulin alpha chain 541 e-153
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 540 e-153
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 540 e-153
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 539 e-153
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 543 bits (1400), Expect = e-154
Identities = 265/282 (93%), Positives = 269/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 543 bits (1399), Expect = e-154
Identities = 265/282 (93%), Positives = 270/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQI
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 542 bits (1397), Expect = e-154
Identities = 265/282 (93%), Positives = 270/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQI
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQI 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 542 bits (1397), Expect = e-154
Identities = 265/282 (93%), Positives = 269/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLAD CTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 542 bits (1397), Expect = e-154
Identities = 263/282 (93%), Positives = 270/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 541 bits (1395), Expect = e-154
Identities = 264/282 (93%), Positives = 270/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEF+VYPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERP+YTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 541 bits (1393), Expect = e-153
Identities = 264/282 (93%), Positives = 268/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 540 bits (1391), Expect = e-153
Identities = 262/282 (92%), Positives = 268/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDR+RKL+DQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHE LSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 540 bits (1391), Expect = e-153
Identities = 265/282 (93%), Positives = 268/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVK DPRHGKYMACCMLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 539 bits (1388), Expect = e-153
Identities = 261/282 (92%), Positives = 269/282 (95%)
Frame = +3
Query: 3 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 182
VLDRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 183 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 362
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 363 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 542
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 297
Query: 543 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINY 722
PANQMVKCDPRHGKYMACC+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 723 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 848
QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,663,711
Number of Sequences: 369166
Number of extensions: 2155811
Number of successful extensions: 5592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5491
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)