Planarian EST Database


Dr_sW_003_M14

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_003_M14
         (782 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08461|ODP2_RAT  Dihydrolipoyllysine-residue acetyltransf...   178   2e-44
sp|O59816|ODP2_SCHPO  Dihydrolipoyllysine-residue acetyltran...   176   6e-44
sp|O00330|ODPX_HUMAN  Pyruvate dehydrogenase protein X compo...   172   9e-43
sp|P10515|ODP2_HUMAN  Dihydrolipoyllysine-residue acetyltran...   172   9e-43
sp|P36413|ODP2_DICDI  Dihydrolipoyllysine-residue acetyltran...   167   2e-41
sp|Q8BKZ9|ODPX_MOUSE  Pyruvate dehydrogenase protein X compo...   164   3e-40
sp|O66119|ODP2_ZYMMO  Dihydrolipoyllysine-residue acetyltran...   160   3e-39
sp|Q9ZD20|ODP2_RICPR  Dihydrolipoyllysine-residue acetyltran...   154   3e-37
sp|Q92HK7|ODP2_RICCN  Dihydrolipoyllysine-residue acetyltran...   152   1e-36
sp|P20285|ODP2_NEUCR  Dihydrolipoyllysine-residue acetyltran...   144   4e-34
>sp|P08461|ODP2_RAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
            dehydrogenase complex (E2) (Dihydrolipoamide
            acetyltransferase component of pyruvate dehydrogenase
            complex) (PDC-E2) (70 kDa mitochondrial autoantigen of
            primary biliary cirrhosis) (PBC)
          Length = 555

 Score =  178 bits (451), Expect = 2e-44
 Identities = 109/244 (44%), Positives = 146/244 (59%), Gaps = 4/244 (1%)
 Frame = +2

Query: 59   PPTTRPAAQPEXXXXXXHVDVPLTNMRQTIARRMAASKSSIPHRYSTGEAS---XXXXXX 229
            PP  R A  P        +D+P++N+R+ IA+R+  SK +IPH Y + + +         
Sbjct: 315  PPGPRVAPTPAGVF----IDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRK 370

Query: 230  XXXXXXDQRGLVLSVNDFIVKAASLALRLVPEINNGLNADGTIKINHNIDISVAVASESG 409
                  + +G + SVNDFI+KA++LA   VPE N+    D  I+ NH +D+SVAV++ +G
Sbjct: 371  ELNKMLEGKGKI-SVNDFIIKASALACLKVPEANSSW-MDTVIRQNHVVDVSVAVSTPAG 428

Query: 410  LITPIVFGADKLPLAAISSTIHELAEKARNNKLQPQEFMGGTFTISNLGMFGIKEFTAII 589
            LITPIVF A    L  I+S +  LA KAR  KLQP EF GGTFTISNLGMFGIK F+AII
Sbjct: 429  LITPIVFNAHIKGLETIASDVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAII 488

Query: 590  NSPQAAILAVGAGIPHLAHDPANPSKPKSVTK-MRFTLCADARIIDETSASEFVSRVKSY 766
            N PQA ILA+GA    L   PA+  K   V   M  TL  D R++D    +++++  K Y
Sbjct: 489  NPPQACILAIGASEDKLI--PADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKY 546

Query: 767  LENP 778
            LE P
Sbjct: 547  LEKP 550
>sp|O59816|ODP2_SCHPO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
            dehydrogenase complex, mitochondrial precursor (E2)
            (Dihydrolipoamide acetyltransferase component of pyruvate
            dehydrogenase complex) (PDC-E2)
          Length = 483

 Score =  176 bits (446), Expect = 6e-44
 Identities = 106/262 (40%), Positives = 145/262 (55%), Gaps = 12/262 (4%)
 Frame = +2

Query: 29   IDRSRLSPVCPP----------TTRPAAQPEXXXXXXHVDVPLTNMRQTIARRMAASKSS 178
            +D     PV  P          TT  A+  +      + D+PL+NMR+ IA R+A SK+ 
Sbjct: 218  VDIENFKPVVAPKPSNEAAAKATTPAASAADAAAPGDYEDLPLSNMRKIIASRLAESKNM 277

Query: 179  IPHRYSTGEASXXXXXXXXXXXXDQRG--LVLSVNDFIVKAASLALRLVPEINNGLNADG 352
             PH Y T   +                    LSVND ++KA + ALR VPE+N     D 
Sbjct: 278  NPHYYVTVSVNMEKIIRLRAALNAMADGRYKLSVNDLVIKATTAALRQVPEVNAAWMGD- 336

Query: 353  TIKINHNIDISVAVASESGLITPIVFGADKLPLAAISSTIHELAEKARNNKLQPQEFMGG 532
             I+   N+DIS+AVA+ SGLITP++     L LA IS+   +  ++ARNNKL+P+E+ GG
Sbjct: 337  FIRQYKNVDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNKLKPEEYQGG 396

Query: 533  TFTISNLGMFGIKEFTAIINSPQAAILAVGAGIPHLAHDPANPSKPKSVTKMRFTLCADA 712
            TFTISNLGMF + +FTAIIN PQA ILAVG  +  +  D  +    K    M+ TL +D 
Sbjct: 397  TFTISNLGMFPVDQFTAIINPPQACILAVGTTVDTVVPDSTSEKGFKVAPIMKCTLSSDH 456

Query: 713  RIIDETSASEFVSRVKSYLENP 778
            R++D   A+ F + +K  LENP
Sbjct: 457  RVVDGAMAARFTTALKKILENP 478
>sp|O00330|ODPX_HUMAN Pyruvate dehydrogenase protein X component, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase-binding protein of
           pyruvate dehydrogenase complex) (Lipoyl-containing
           pyruvate dehydrogenase complex component X) (E3-binding
           protein) (E3BP) (proX)
          Length = 501

 Score =  172 bits (436), Expect = 9e-43
 Identities = 97/245 (39%), Positives = 150/245 (61%), Gaps = 2/245 (0%)
 Frame = +2

Query: 50  PVCPPTTRPAAQPEXXXXXXHVDVPLTNMRQTIARRMAASKSSIPHRYSTGEASXXXXXX 229
           PV PP + P  QP         ++P +N+R+ IA+R+  SKS++PH Y+T +        
Sbjct: 258 PVIPPVSTPG-QPNAVGTF--TEIPASNIRRVIAKRLTESKSTVPHAYATADCDLGAVLK 314

Query: 230 XXXXXXDQRGLVLSVNDFIVKAASLALRLVPEINNGLNADGTIKINHNIDISVAVASESG 409
                     + +SVNDFI+KAA++ L+ +P++N   + +G  ++   IDISVAVA++ G
Sbjct: 315 VRQDLVKD-DIKVSVNDFIIKAAAVTLKQMPDVNVSWDGEGPKQLPF-IDISVAVATDKG 372

Query: 410 LITPIVFGADKLPLAAISSTIHELAEKARNNKLQPQEFMGGTFTISNLGMFGIKEFTAII 589
           L+TPI+  A    +  I+ ++  L++KAR+ KL P+E+ GG+F+ISNLGMFGI EFTA+I
Sbjct: 373 LLTPIIKDAAAKGIQEIADSVKALSKKARDGKLLPEEYQGGSFSISNLGMFGIDEFTAVI 432

Query: 590 NSPQAAILAVGAGIP--HLAHDPANPSKPKSVTKMRFTLCADARIIDETSASEFVSRVKS 763
           N PQA ILAVG   P   L  D    +K +    +  T+ +D+R++D+  A+ F+   K+
Sbjct: 433 NPPQACILAVGRFRPVLKLTEDEEGNAKLQQRQLITVTMSSDSRVVDDELATRFLKSFKA 492

Query: 764 YLENP 778
            LENP
Sbjct: 493 NLENP 497
>sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
            dehydrogenase complex, mitochondrial precursor (Pyruvate
            dehydrogenase complex E2 subunit) (PDCE2) (E2)
            (Dihydrolipoamide S-acetyltransferase component of
            pyruvate dehydrogenase complex) (PDC-E2) (70 kDa
            mitochondrial autoantigen of primary biliary cirrhosis)
            (PBC) (M2 antigen complex 70 kDa subunit)
          Length = 614

 Score =  172 bits (436), Expect = 9e-43
 Identities = 106/245 (43%), Positives = 143/245 (58%), Gaps = 6/245 (2%)
 Frame = +2

Query: 62   PTTRPAAQPEXXXXXXHVDVPLTNMRQTIARRMAASKSSIPHRY-----STGEASXXXXX 226
            P T P   P         D+P++N+R+ IA+R+  SK +IPH Y     + GE       
Sbjct: 373  PPTGPGMAP--VPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKE 430

Query: 227  XXXXXXXDQRGLVLSVNDFIVKAASLALRLVPEINNGLNADGTIKINHNIDISVAVASES 406
                     +   +SVNDFI+KA++LA   VPE N+    D  I+ NH +D+SVAV++ +
Sbjct: 431  LNKILEGRSK---ISVNDFIIKASALACLKVPEANSSW-MDTVIRQNHVVDVSVAVSTPA 486

Query: 407  GLITPIVFGADKLPLAAISSTIHELAEKARNNKLQPQEFMGGTFTISNLGMFGIKEFTAI 586
            GLITPIVF A    +  I++ +  LA KAR  KLQP EF GGTFTISNLGMFGIK F+AI
Sbjct: 487  GLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAI 546

Query: 587  INSPQAAILAVGAGIPHLAHDPANPSKPKSV-TKMRFTLCADARIIDETSASEFVSRVKS 763
            IN PQA ILA+GA    L   PA+  K   V + M  TL  D R++D    +++++  + 
Sbjct: 547  INPPQACILAIGASEDKLV--PADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRK 604

Query: 764  YLENP 778
            YLE P
Sbjct: 605  YLEKP 609
>sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
            dehydrogenase complex, mitochondrial precursor (E2)
            (Dihydrolipoamide acetyltransferase component of pyruvate
            dehydrogenase complex) (PDC-E2)
          Length = 592

 Score =  167 bits (424), Expect = 2e-41
 Identities = 100/223 (44%), Positives = 135/223 (60%), Gaps = 2/223 (0%)
 Frame = +2

Query: 116  DVPLTNMRQTIARRMAASKSSIPHRYSTGEASXXXXXXXXXXXXDQRGLVLSVNDFIVKA 295
            D+P +N+R+  A R+  SK +IPH Y T E                  + +SVNDFIVKA
Sbjct: 368  DIPHSNIRKVTAARLTESKQTIPHYYLTMECRVDKLLKLRSELNAMNTVKISVNDFIVKA 427

Query: 296  ASLALRLVPEINNGLNADGTIKINHNIDISVAVASESGLITPIVFGADKLPLAAISSTIH 475
            +  ALR  P +N+    D  I+  HNIDI+VAV +  GL TPIV G D   L +IS+++ 
Sbjct: 428  SLPALRDNPVVNSTWT-DQFIRRYHNIDINVAVNTPQGLFTPIVRGVDMKGLNSISTSVK 486

Query: 476  ELAEKARNNKLQPQEFMGGTFTISNLGMFGIKEFTAIINSPQAAILAVGAG--IPHLAHD 649
            +LAEKA+N KL P EF  GTFTISNLGM GIK+F A+IN PQAAILA+     +  L++ 
Sbjct: 487  QLAEKAQNGKLHPSEFESGTFTISNLGMLGIKQFAAVINPPQAAILALVPQKLVSFLSNK 546

Query: 650  PANPSKPKSVTKMRFTLCADARIIDETSASEFVSRVKSYLENP 778
            P +P   ++ T +  TL  D R+ID    +E++   K Y+ENP
Sbjct: 547  PDSPY--ETATILSVTLSCDHRVIDGAVGAEWLKSFKDYVENP 587
>sp|Q8BKZ9|ODPX_MOUSE Pyruvate dehydrogenase protein X component, mitochondrial precursor
           (Dihydrolipoamide dehydrogenase-binding protein of
           pyruvate dehydrogenase complex) (Lipoyl-containing
           pyruvate dehydrogenase complex component X)
          Length = 501

 Score =  164 bits (415), Expect = 3e-40
 Identities = 93/245 (37%), Positives = 148/245 (60%), Gaps = 2/245 (0%)
 Frame = +2

Query: 50  PVCPPTTRPAAQPEXXXXXXHVDVPLTNMRQTIARRMAASKSSIPHRYSTGEASXXXXXX 229
           P+ PP + P  QP         ++P +N+R+ IA+R+  SKS++PH Y+T +        
Sbjct: 258 PMTPPVSIPG-QPNAAGTF--TEIPASNIRRVIAKRLTESKSTVPHAYATADCDLGAVLK 314

Query: 230 XXXXXXDQRGLVLSVNDFIVKAASLALRLVPEINNGLNADGTIKINHNIDISVAVASESG 409
                     + +SVNDFI++AA++ L+ +P +N   + +G  ++  ++DISVAVA++ G
Sbjct: 315 VRRDLVKD-DIKVSVNDFIIRAAAVTLKQMPGVNVTWDGEGPKQLP-SVDISVAVATDKG 372

Query: 410 LITPIVFGADKLPLAAISSTIHELAEKARNNKLQPQEFMGGTFTISNLGMFGIKEFTAII 589
           LITPI+  A    +  I+ ++  L++KAR+ KL P+E+ GG+F+ISNLGMFGI EF A+I
Sbjct: 373 LITPIIKDAAAKGIQEIADSVKVLSKKARDGKLMPEEYQGGSFSISNLGMFGIDEFAAVI 432

Query: 590 NSPQAAILAVGAGIP--HLAHDPANPSKPKSVTKMRFTLCADARIIDETSASEFVSRVKS 763
           N PQA ILAVG   P   L  D     + +    +  T+ +D+R++D+  A+ F+   K+
Sbjct: 433 NPPQACILAVGRFRPVLKLTEDEEGNPQLQQHQLITVTMSSDSRVVDDELATRFLETFKA 492

Query: 764 YLENP 778
            LENP
Sbjct: 493 NLENP 497
>sp|O66119|ODP2_ZYMMO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
           dehydrogenase complex (E2) (Dihydrolipoamide
           acetyltransferase component of pyruvate dehydrogenase
           complex)
          Length = 440

 Score =  160 bits (406), Expect = 3e-39
 Identities = 97/262 (37%), Positives = 145/262 (55%), Gaps = 5/262 (1%)
 Frame = +2

Query: 8   EGDVLQHIDRSRLSPVCPPTTRPAAQPEXXXXXXHVDVPLTNMRQTIARRMAASKSSIPH 187
           + D+   I  +  +   P  + P A  +      H  + L+NMR+ IARR+  SK +IPH
Sbjct: 179 KADIEAFIAEANQASSNPSVSTPEASGKITHDTPHNSIKLSNMRRVIARRLTESKQNIPH 238

Query: 188 RYSTGEASXXXXXXXXXXXXDQ---RGLVLSVNDFIVKAASLALRLVPEINNGLNADGTI 358
            Y T +              +    + + +SVND ++KA +LAL+  P +N   + D  +
Sbjct: 239 IYLTVDVQMDALLKLRSELNESLAVQNIKISVNDMLIKAQALALKATPNVNVAFDGDQML 298

Query: 359 KINHNIDISVAVASESGLITPIVFGADKLPLAAISSTIHELAEKARNNKLQPQEFMGGTF 538
           + +   DISVAV+ E GLITPI+  AD   L+A+S  + EL  +AR  +LQPQE+ GGT 
Sbjct: 299 QFSQ-ADISVAVSVEGGLITPILKQADTKSLSALSVEMKELIARAREGRLQPQEYQGGTS 357

Query: 539 TISNLGMFGIKEFTAIINSPQAAILAVGAG--IPHLAHDPANPSKPKSVTKMRFTLCADA 712
           +ISN+GMFGIK+F A+IN PQA+ILA+G+G   P +  D    +   ++T        D 
Sbjct: 358 SISNMGMFGIKQFNAVINPPQASILAIGSGERRPWVIDDAITIATVATITG-----SFDH 412

Query: 713 RIIDETSASEFVSRVKSYLENP 778
           R+ID   A+ F+S  K  +E P
Sbjct: 413 RVIDGADAAAFMSAFKHLVEKP 434
>sp|Q9ZD20|ODP2_RICPR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
           dehydrogenase complex (E2) (Dihydrolipoamide
           acetyltransferase component of pyruvate dehydrogenase
           complex)
          Length = 408

 Score =  154 bits (388), Expect = 3e-37
 Identities = 92/224 (41%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = +2

Query: 119 VPLTNMRQTIARRMAASKSSIPHRYSTGEASXXXXXXXXXXXX----DQRGLVLSVNDFI 286
           VP  N+R+ IA+R+  SK ++PH Y + E +                + +   +SVNDFI
Sbjct: 184 VPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDVREDINKSFSEDKVTKISVNDFI 243

Query: 287 VKAASLALRLVPEINNGLNADGTIKINHNIDISVAVASESGLITPIVFGADKLPLAAISS 466
           + A + AL+ VP  N   + D  I+  +N+DISVAVA E+G++TPIV  A+K  +  +S 
Sbjct: 244 ILAVAKALQEVPNANASWSEDA-IRYYNNVDISVAVAIENGIVTPIVKDANKKNIIELSR 302

Query: 467 TIHELAEKARNNKLQPQEFMGGTFTISNLGMFGIKEFTAIINSPQAAILAVGAGIPHLAH 646
            +  L +KA++NKL P EF GG FTISNLGM+GIK F AIIN+PQ+ I+ VGA       
Sbjct: 303 EMKTLIKKAKDNKLTPIEFQGGGFTISNLGMYGIKNFNAIINTPQSCIMGVGASTKRAI- 361

Query: 647 DPANPSKPKSVTKMRFTLCADARIIDETSASEFVSRVKSYLENP 778
                 +    T M  TL AD R+ID   ++EF++  K ++ENP
Sbjct: 362 --VKNDQIIIATIMDVTLSADHRVIDGAVSAEFLASFKRFIENP 403
>sp|Q92HK7|ODP2_RICCN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
           dehydrogenase complex (E2) (Dihydrolipoamide
           acetyltransferase component of pyruvate dehydrogenase
           complex)
          Length = 412

 Score =  152 bits (384), Expect = 1e-36
 Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 4/224 (1%)
 Frame = +2

Query: 119 VPLTNMRQTIARRMAASKSSIPHRYSTGEASXXXXXXXXXXXX----DQRGLVLSVNDFI 286
           VP  N+R+ IA+R+  SK ++PH Y + E +                + +   +SVNDFI
Sbjct: 188 VPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDIREDINKFFSEDKSTRISVNDFI 247

Query: 287 VKAASLALRLVPEINNGLNADGTIKINHNIDISVAVASESGLITPIVFGADKLPLAAISS 466
           + A + AL+ VP  N     D  I+  +N+DISVAVA E+GL+TPIV  A++  +  +S 
Sbjct: 248 ILAVAKALQEVPNANASWGEDA-IRYYNNVDISVAVAIENGLVTPIVKNANQKNILELSR 306

Query: 467 TIHELAEKARNNKLQPQEFMGGTFTISNLGMFGIKEFTAIINSPQAAILAVGAGIPHLAH 646
            +  L +KA++NKL P+EF GG FTISNLGM+GIK F AIIN PQ+ I+ VGA       
Sbjct: 307 EMKALIKKAKDNKLTPEEFQGGGFTISNLGMYGIKNFNAIINPPQSCIMGVGASAKRAI- 365

Query: 647 DPANPSKPKSVTKMRFTLCADARIIDETSASEFVSRVKSYLENP 778
                 +    T M  TL AD R++D    +EF+   K ++E+P
Sbjct: 366 --VKNDQITIATIMDVTLSADHRVVDGAVGAEFLVAFKKFIESP 407
>sp|P20285|ODP2_NEUCR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
           dehydrogenase complex, mitochondrial precursor (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex) (PDC-E2) (MRP3)
          Length = 458

 Score =  144 bits (362), Expect = 4e-34
 Identities = 89/229 (38%), Positives = 134/229 (58%), Gaps = 6/229 (2%)
 Frame = +2

Query: 110 HVDVPLTNMRQTIARRMAASKSSIPHRYSTGEASXXXXXXXXXXXXDQRG--LVLSVNDF 283
           + DVP++ MR+TIA R+  S +  PH + +   S                    LSVNDF
Sbjct: 227 YTDVPISGMRKTIAARLKESVTENPHFFVSTNLSVSKLLKLRQALNSSADGRYKLSVNDF 286

Query: 284 IVKAASLALRLVPEINNGLNADGTIKINHNIDISVAVASESGLITPIVFGADKLPLAAIS 463
           ++KA  +A + VP +N+    DG I+    +D+SVAVA+ +GLITPIV G +   L +IS
Sbjct: 287 LIKAMGIASKRVPTVNSSWR-DGVIRQFETVDVSVAVATPNGLITPIVKGVEGKGLESIS 345

Query: 464 STIHELAEKARNNKLQPQEFMGGTFTISNLGMF-GIKEFTAIINSPQAAILAVGAGIPHL 640
           + + ELA+KAR+ KL+P+E+ GG+ +ISN+GM   ++ FTAIIN PQAAILAVGA    +
Sbjct: 346 AAVKELAKKARDGKLKPEEYQGGSISISNMGMNPAVQSFTAIINPPQAAILAVGAP-QKV 404

Query: 641 AHDPANPSKPKSVT---KMRFTLCADARIIDETSASEFVSRVKSYLENP 778
           A    N      V+   ++  T   D +++D    +E++  +K  +ENP
Sbjct: 405 AVPVENEDGTTGVSWDEQIIVTASFDHKVVDGAVGAEWIRELKKVIENP 453
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,214,742
Number of Sequences: 369166
Number of extensions: 1917272
Number of successful extensions: 5640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5569
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)