Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L24
(603 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3) 42 0.001
sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4) 42 0.001
sp|Q9UQ03|COR2B_HUMAN Coronin-2B (Coronin-like protein C) (... 40 0.003
sp|Q8BH44|COR2B_MOUSE Coronin-2B 40 0.005
sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57)... 37 0.029
sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57)... 37 0.029
sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E) 37 0.039
sp|Q9D2V7|CORO7_MOUSE Coronin-7 (70 kDa WD repeat tumor rej... 37 0.050
sp|Q920J3|CORO6_RAT Coronin-6 37 0.050
sp|Q92828|COR2A_HUMAN Coronin-2A (WD repeat-containing prot... 36 0.066
>sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3)
Length = 474
Score = 42.0 bits (97), Expect = 0.001
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 ALSAEEWFEGTNNNPILVSMKDGF-KTKERTRKPVKAAIKSKITDQKAPA 152
AL AEEWFEG N +PIL+S+K G+ K R K +K I D K A
Sbjct: 371 ALEAEEWFEGKNADPILISLKHGYIPGKNRDLK----VVKKNILDSKPAA 416
>sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4)
Length = 474
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 6 ALSAEEWFEGTNNNPILVSMKDGF-KTKERTRKPVKAAI-KSKITDQK 143
AL AEEWFEG N +PIL+S+K G+ K R K VK I SK T K
Sbjct: 371 ALEAEEWFEGKNADPILISLKHGYIPGKNRDLKVVKKNILDSKPTANK 418
>sp|Q9UQ03|COR2B_HUMAN Coronin-2B (Coronin-like protein C) (ClipinC) (Protein FC96)
Length = 475
Score = 40.4 bits (93), Expect = 0.003
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSK 128
PAL+ +EW G N +P+L+S+K+G+ K+ ++ KA IK K
Sbjct: 372 PALTPDEWLGGINRDPVLMSLKEGY--KKSSKMVFKAPIKEK 411
>sp|Q8BH44|COR2B_MOUSE Coronin-2B
Length = 475
Score = 40.0 bits (92), Expect = 0.005
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKA 146
PAL+ +EW G N +P+L+S+K+G+K K K K+ I ++K+
Sbjct: 372 PALTPDEWLGGINRDPVLMSLKEGYK------KSSKVVFKAPIREKKS 413
>sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 37.4 bits (85), Expect = 0.029
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGF 77
PAL+AEEW G + P+L+S+KDG+
Sbjct: 372 PALTAEEWLGGRDAGPLLISLKDGY 396
>sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 37.4 bits (85), Expect = 0.029
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGF 77
PAL+AEEW G + P+L+S+KDG+
Sbjct: 372 PALTAEEWLGGRDAGPLLISLKDGY 396
>sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E)
Length = 471
Score = 37.0 bits (84), Expect = 0.039
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPA 152
PAL A+EW G + P+L+S+K+G+ + V K I D + PA
Sbjct: 371 PALEADEWLSGQDAEPVLISLKEGYVPPKHRELRV---TKRNILDVRPPA 417
>sp|Q9D2V7|CORO7_MOUSE Coronin-7 (70 kDa WD repeat tumor rejection antigen homolog)
Length = 922
Score = 36.6 bits (83), Expect = 0.050
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPAKVEI------ 164
PALSA+ WFEG N P L+S++ T PV A + ++ ++AP+ +
Sbjct: 834 PALSAKAWFEGANGQPRLLSLQPPGMT------PVSQAPR-EVPARRAPSSAQYLEEKSD 886
Query: 165 --KSXXXXXXXXXXXXXRSKPLPKTAFKRASEENSD 266
K R PLP+ +F+ E+ D
Sbjct: 887 QQKKEELLNAMVAKLGNREDPLPQDSFEGVDEDEWD 922
>sp|Q920J3|CORO6_RAT Coronin-6
Length = 472
Score = 36.6 bits (83), Expect = 0.050
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPA 152
PAL A+EW G + P+L+S+K+G+ + V K I D + PA
Sbjct: 371 PALEADEWLSGQDAEPVLISLKEGYVPPKHREFRV---TKRNILDVRPPA 417
>sp|Q92828|COR2A_HUMAN Coronin-2A (WD repeat-containing protein 2) (IR10)
Length = 525
Score = 36.2 bits (82), Expect = 0.066
Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 3/145 (2%)
Frame = +3
Query: 3 PALSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPAKVEIKSXXXX 182
P+L+A+EW G N +PILVS++ G +P + I + APA + +
Sbjct: 377 PSLTAQEWLSGMNRDPILVSLRPG----SELLRPHPLPAERPIFNSMAPASPRLLNQTEK 432
Query: 183 XXXXXXXXXRS---KPLPKTAFKRASEENSDEVDRXXXXXXXXXXXXXXXXXXXXXXMQR 353
S + +P+ A + EE + Q
Sbjct: 433 LAAEDGWRSSSLLEEKMPRWAAEHRLEEKKTWLTNGFDVFECPPPKTENELLQMFYRQQE 492
Query: 354 EIDRLSRAVRDLTHRVKNLEEERRN 428
EI RL + + K LE E +N
Sbjct: 493 EIRRLRELLTQREVQAKQLELEIKN 517
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,489,893
Number of Sequences: 369166
Number of extensions: 711831
Number of successful extensions: 1979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1976
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)