Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L23
(147 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q44775|FTSW_BORBU Cell division protein ftsW 30 1.7
sp|Q21988|AMX1_CAEEL Amine oxidase family member 1 30 2.2
sp|Q9JHG6|CCP1_MOUSE Calcipressin-1 (Down syndrome critical... 29 2.9
sp|P53805|CCP1_HUMAN Calcipressin-1 (Down syndrome critical... 29 3.8
sp|Q9UKA8|CCP3_HUMAN Calcipressin-3 (Down syndrome candidat... 28 6.4
sp|O21409|NU2M_SCYCA NADH-ubiquinone oxidoreductase chain 2... 28 6.4
sp|Q63377|AT1B3_RAT Sodium/potassium-transporting ATPase be... 28 8.4
>sp|Q44775|FTSW_BORBU Cell division protein ftsW
Length = 364
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 121 SPTVLCFTKLQSIFLTMASYMTFKSFTRKSINFEKPS 11
+P L FT+L +FL S+M F F R S+NF K S
Sbjct: 41 NPNFLFFTRLNYLFL---SFMVFLVFERISLNFLKKS 74
>sp|Q21988|AMX1_CAEEL Amine oxidase family member 1
Length = 783
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 3 LVVDGFSKFIDFLVKDLNVMYDAIVKKIDW 92
++ DG + IDFL L++ + VK IDW
Sbjct: 514 VITDGAQRIIDFLATGLDIRLNCPVKCIDW 543
>sp|Q9JHG6|CCP1_MOUSE Calcipressin-1 (Down syndrome critical region protein 1 homolog)
(Myocyte-enriched calcineurin-interacting protein 1)
(MCIP1)
Length = 198
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 109 LCFTKLQSIFLTM---ASYMTFKSFTRKSINFEKP 14
LC K +S+F T ++ FKSF R INF P
Sbjct: 27 LCRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNP 61
>sp|P53805|CCP1_HUMAN Calcipressin-1 (Down syndrome critical region protein 1)
(Myocyte-enriched calcineurin interacting protein 1)
(MCIP1) (Adapt78)
Length = 197
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 109 LCFTKLQSIFLTMASYMTF---KSFTRKSINFEKP 14
LC K +S+F T +TF KSF R INF P
Sbjct: 27 LCRAKFESLFRTYDKDITFQYFKSFKRVRINFSNP 61
>sp|Q9UKA8|CCP3_HUMAN Calcipressin-3 (Down syndrome candidate region 1-like protein 2)
(Myocyte-enriched calcineurin interacting protein 3)
(MCIP3)
Length = 241
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 103 FTKLQSIFLTMASYMTFKSFTRKSINFEKP 14
F L +I+ ++ FKSF R INF KP
Sbjct: 68 FEALFTIYDDQVTFQLFKSFRRVRINFSKP 97
>sp|O21409|NU2M_SCYCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 348
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 142 VILIFPRSPTVLCFTKLQSIFLTMASYMTFKSFTRKSINFEKPST 8
+I I SP++ + +F+T+ +++ FK+F IN ST
Sbjct: 190 MITILHYSPSLTLLNLILYMFMTLTTFLLFKTFNSTKINSISSST 234
>sp|Q63377|AT1B3_RAT Sodium/potassium-transporting ATPase beta-3 chain
(Sodium/potassium-dependent ATPase beta-3 subunit)
(ATPB-3)
Length = 279
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 139 ILIFPRSPTVLCFTKLQSIFLTMASYMTFKSFTRKSINFEKP 14
+++FP+ PT L +T +M+ T+K F NF KP
Sbjct: 81 LMVFPKPPTALDYT------YSMSDPHTYKKFVEDLKNFLKP 116
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,200,927
Number of Sequences: 369166
Number of extensions: 167409
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1671561060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)