Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L19
(767 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BSH4|U082_HUMAN UPF0082 protein PRO0477 87 4e-17
sp|Q8K0Z7|U082_MOUSE UPF0082 protein 84 4e-16
sp|Q8U9K1|Y1C7_AGRT5 Hypothetical UPF0082 protein Atu3727/A... 77 4e-14
sp|Q838A9|Y663_ENTFA Hypothetical UPF0082 protein EF0663 77 7e-14
sp|Q8Y6Z5|YF35_LISMO Hypothetical UPF0082 protein lmo1535 76 9e-14
sp|Q65GN7|Y2909_BACLD Hypothetical UPF0082 protein BLi02909... 75 1e-13
sp|P62037|Y904_LACJO Hypothetical UPF0082 protein LJ0904 75 1e-13
sp|Q71ZD5|Y1554_LISMF Hypothetical UPF0082 protein LMOf2365... 75 3e-13
sp|Q5QYV3|Y1088_IDILO Hypothetical UPF0082 protein IL1088 75 3e-13
sp|Q8YPC2|Y4276_ANASP Hypothetical UPF0082 protein All4276 74 3e-13
>sp|Q9BSH4|U082_HUMAN UPF0082 protein PRO0477
Length = 297
Score = 87.4 bits (215), Expect = 4e-17
Identities = 59/219 (26%), Positives = 122/219 (55%), Gaps = 4/219 (1%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNA-IKIGDGIRDPKLNSHLASVIDRARS 292
AGH+ W V+ K KD + + + S+L LN + + +G +P+ NS+LA++++ RS
Sbjct: 58 AGHNKWSKVRHIKGPKD---VERSRIFSKLCLNIRLAVKEGGPNPEHNSNLANILEVCRS 114
Query: 293 LNVSMAALEKILSKNETVDPYFI-EYQAPGGIFVVIESCNKHIVKEKSTIVSVVKKYGFK 469
++ + +E L ++ D Y + E + PGG ++IE+ + K ++ I ++ K G
Sbjct: 115 KHMPKSTIETALKMEKSKDTYLLYEGRGPGGSSLLIEALSNSSHKCQADIRHILNKNGGV 174
Query: 470 LAPTSFLKVAFSYKGEVSCKPDNNILS--NEDQGLEVALEVGADEVIYAKDEETDSMLYK 643
+A + + +F KG + + ++ N ++ LE+A+E GA++V +DEE + ++K
Sbjct: 175 MAVGA--RHSFDKKGVIVVEVEDREKKAVNLERALEMAIEAGAEDVKETEDEE-ERNVFK 231
Query: 644 FFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKITD 760
F CD +++ Q++ L + L V+ +P ++V++ +
Sbjct: 232 FICDASSLHQVRKKLDSLGLCSVSCALEFIPNSKVQLAE 270
>sp|Q8K0Z7|U082_MOUSE UPF0082 protein
Length = 294
Score = 84.0 bits (206), Expect = 4e-16
Identities = 61/219 (27%), Positives = 117/219 (53%), Gaps = 4/219 (1%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNA-IKIGDGIRDPKLNSHLASVIDRARS 292
AGH+ W V+ K KD + + + S+L L+ + + +G +P+ NS LA++++ RS
Sbjct: 55 AGHNKWSKVRHIKGPKDM---ERSRIFSKLTLSIRLAVKEGGPNPENNSSLANILELCRS 111
Query: 293 LNVSMAALEKILSKNETVDPYFI-EYQAPGGIFVVIESCNKHIVKEKSTIVSVVKKYGFK 469
N+ + +E L + Y + E + PGG ++IE+ + K I ++ K G
Sbjct: 112 KNMPKSTIESALKTEKNKGIYLLYEGRGPGGSSLLIEALSNSGPKCHLDIKYILNKNGGM 171
Query: 470 LAPTSFLKVAFSYKGEVSCKPDNNILS--NEDQGLEVALEVGADEVIYAKDEETDSMLYK 643
+A + + F KG V ++ N ++ LE+A+E GA++V A+DEE + L+K
Sbjct: 172 MAEGA--RHFFDKKGVVVVGVEDREKKAVNLERALELAIEAGAEDVKEAEDEE-EKNLFK 228
Query: 644 FFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKITD 760
F CD +++ Q++ L + L V+ + +P ++V++ +
Sbjct: 229 FICDASSLHQVRKKLDSLGLCPVSCSMEFIPHSKVQLAE 267
>sp|Q8U9K1|Y1C7_AGRT5 Hypothetical UPF0082 protein Atu3727/AGR_L_2215
Length = 248
Score = 77.4 bits (189), Expect = 4e-14
Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 5/221 (2%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNAIKIGDGIRDPKLNSHLASVIDRARSL 295
AGHS ++N+ K +D ++ ++R + A K G + DP +N+ L I A++
Sbjct: 2 AGHSQFKNIMHRKGKQDSVRSKMFSKLAREITVAAKTG--MPDPNMNARLRLAIQNAKAQ 59
Query: 296 NVSMAALEKILSK-----NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVVKKY 460
++ +E+ + K +E D E PGG+ VV+E+ + + S + S+ K
Sbjct: 60 SMPKDNIERAIKKASGADSENYDEVRYEGYGPGGVAVVVEALTDNRNRTASNVRSIFTKA 119
Query: 461 GFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDSMLY 640
G L T + +F GE++ K + + + D+ +E A+E GAD+V ++D T
Sbjct: 120 GGALGETGSVSFSFDRVGEITYKAE---VGDADKVMEAAIEAGADDVESSEDGHT----- 171
Query: 641 KFFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKITDE 763
C + ++ AL+ E + P N V + +E
Sbjct: 172 -IICGFEAMNEVSKALEGVLGEAESVKAIWKPQNTVPVDEE 211
>sp|Q838A9|Y663_ENTFA Hypothetical UPF0082 protein EF0663
Length = 242
Score = 76.6 bits (187), Expect = 7e-14
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNAIKIGDGIRDPKLNSHLASVIDRARSL 295
+GHS W N++ K+ +D + +SR + A K G DP +N L +D+A+S
Sbjct: 2 SGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGG--PDPAMNPALRLAVDKAKSA 59
Query: 296 NVSMAALEKILSK------NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVVKK 457
N+ + + + K E D E PGG+ V++ + + + + + +
Sbjct: 60 NMPNDNIARAIKKASSAGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFTR 119
Query: 458 YGFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDSML 637
G L T + F KG + K +++ + ED LEV LE G +++ ET +
Sbjct: 120 NGGSLGETGSVNYMFDRKGYIVIKREDHAI-EEDDMLEVVLEAGGEDI------ETSPEV 172
Query: 638 YKFFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKITDE 763
++ + P + T ++ AL+ + + +VP + + DE
Sbjct: 173 FEIYTAPEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDE 214
>sp|Q8Y6Z5|YF35_LISMO Hypothetical UPF0082 protein lmo1535
Length = 241
Score = 76.3 bits (186), Expect = 9e-14
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNAIKIGDGIRDPKLNSHLASVIDRARSL 295
+GHS W N++ K+ +D + ++R + A K G DP LN L V+D+A+++
Sbjct: 2 SGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGP---DPSLNPSLRLVMDKAKAV 58
Query: 296 NVSMAALEKILSK------NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVVKK 457
N+ +++ + K E D E APGGI V++ + + + + + K
Sbjct: 59 NMPNDNIKRAIDKASGNTSGENYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 458 YGFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDSML 637
G L T + F KG + + + E+ LE A+E GAD+V ++D +
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLTVDEEEFMLE-AIEAGADDVEVSED------V 171
Query: 638 YKFFCDPNNITQIKSALQ 691
++ F DP +++K ALQ
Sbjct: 172 FEIFTDPATFSEVKEALQ 189
>sp|Q65GN7|Y2909_BACLD Hypothetical UPF0082 protein BLi02909/BL01150
Length = 240
Score = 75.5 bits (184), Expect = 1e-13
Identities = 49/223 (21%), Positives = 112/223 (50%), Gaps = 6/223 (2%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNAIKIGDGIRDPKLNSHLASVIDRARSL 295
AGHS W+N+++ K+ +D + M +++ + A K +G DP+ N+ L VID+A++
Sbjct: 2 AGHSKWKNIQRRKNAQDAKRGKIFMKLAKEIYVAAK--EGGPDPESNASLRLVIDKAKNA 59
Query: 296 NVSMAALEKILSK------NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVVKK 457
N+ +++ + K ++ + E P G+ V+++ + + +++ + K
Sbjct: 60 NMPNDNIDRAIKKASGSQDGKSYEEITYEGYGPSGVAVMVKCLTDNKNRTATSVRTAFSK 119
Query: 458 YGFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDSML 637
G L T + F KG ++ + ++ + E+ LEV ++ GA+E+ ET L
Sbjct: 120 NGGSLGETGCVSYMFDRKGYIAIEREDLEIDEEEFMLEV-IDAGAEEL------ETSEEL 172
Query: 638 YKFFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKITDEM 766
++ + +P ++K +L+ + ++ S +VP ++ + +
Sbjct: 173 FEIYTEPEQFEEVKKSLEERGYKLATSEITMVPQTYAEVDEAL 215
>sp|P62037|Y904_LACJO Hypothetical UPF0082 protein LJ0904
Length = 243
Score = 75.5 bits (184), Expect = 1e-13
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 5/218 (2%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNAIKIGDGIRDPKLNSHLASVIDRARSL 295
+GHS W N++ K+ +D + +SR + A K G DP N L V+D+AR+
Sbjct: 2 SGHSKWHNIQGRKNAQDAKRGKVFQKLSREIYMAAKSGGP--DPSGNPTLRMVMDKARAA 59
Query: 296 NVSMAALEKILSK-----NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVVKKY 460
N+ +E+ + K +E D E APGG+ V++E+ + + S + +
Sbjct: 60 NMPKTNIERAIKKAEGNSDEHYDEITYEGYAPGGVAVLVEALTDNKNRTASDVRVAFTRN 119
Query: 461 GFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDSMLY 640
G L T + F KG + ++EDQ L ++ G D++ ET +
Sbjct: 120 GGSLGATGSVAYMFDRKGYLVIDRSTTD-ADEDQVLLDVMDAGGDDL------ETSDDAF 172
Query: 641 KFFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKI 754
+ + DP T ++ AL+ ++ N+ ++P N +
Sbjct: 173 EIYTDPKQFTAVRDALEKAGYKLANAELTMIPQNTTPV 210
>sp|Q71ZD5|Y1554_LISMF Hypothetical UPF0082 protein LMOf2365_1554
Length = 241
Score = 74.7 bits (182), Expect = 3e-13
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 6/198 (3%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNAIKIGDGIRDPKLNSHLASVIDRARSL 295
+GHS W N++ K+ +D + ++R + A K G DP LN L V+D+A+++
Sbjct: 2 SGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGP---DPNLNPSLRLVMDKAKAV 58
Query: 296 NVSMAALEKILSK------NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVVKK 457
N+ +++ + K E D E APGGI V++ + + + + + K
Sbjct: 59 NMPNDNIKRAIDKAAGNTSGENYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 458 YGFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDSML 637
G L T + F KG + + + E+ LE A+E GAD+V ++D +
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLE-AIEAGADDVEVSED------V 171
Query: 638 YKFFCDPNNITQIKSALQ 691
++ F DP ++K ALQ
Sbjct: 172 FEIFTDPATFPEVKEALQ 189
>sp|Q5QYV3|Y1088_IDILO Hypothetical UPF0082 protein IL1088
Length = 249
Score = 74.7 bits (182), Expect = 3e-13
Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 7/223 (3%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLN-AIKIGDGIRDPKLNSHLASVIDRARS 292
AGHS W N+K K +D + ++L+ + +G DP+ N L + ID+A S
Sbjct: 2 AGHSKWSNIKHRKAAQD---AKRGKIFTKLIREITVSAREGGGDPETNPRLRAAIDKALS 58
Query: 293 LNVSMAALEKILSK------NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVVK 454
N+ ++ + + + VD E P G+ V++E + + S +
Sbjct: 59 NNMKRDTIDTAVKRGSGDLEGDNVDELTYEGYGPSGVAVLLECMTDNRNRTVSDVRHAFS 118
Query: 455 KYGFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDSM 634
K G L + F+ KG +S E+Q +E ALE GA++++ A DE + +
Sbjct: 119 KLGGNLGTDGSVAYLFNKKGVISYSDG----VTEEQVMEPALEAGAEDIL-AYDEGSIDV 173
Query: 635 LYKFFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKITDE 763
+ P N +K AL K LE N+ VP RV + +E
Sbjct: 174 I----TSPENFGAVKDALDAKGLEASNAEVTQVPDTRVDLDEE 212
>sp|Q8YPC2|Y4276_ANASP Hypothetical UPF0082 protein All4276
Length = 252
Score = 74.3 bits (181), Expect = 3e-13
Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 8/223 (3%)
Frame = +2
Query: 116 AGHSHWQNVKQTKDMKDKIKCDNAMLISRLMLNAIKIGDGIRDPKLNSHLASVIDRARSL 295
AGHS W N+K+ K + D K +SR ++ A + G+ DP N L + ID+A++
Sbjct: 2 AGHSKWANIKRQKAVVDAKKGKTFTQLSRAIILAAR--SGVPDPSGNFQLRTAIDKAKAA 59
Query: 296 NVSMAALEKILSK--------NETVDPYFIEYQAPGGIFVVIESCNKHIVKEKSTIVSVV 451
+ +E+ ++K N +++ E PGG+ ++IE+ + + + +
Sbjct: 60 GIPNDNIERAIAKGAGTFGGDNASLEEIRYEGYGPGGVAILIEALTDNRNRTAADLRVAF 119
Query: 452 KKYGFKLAPTSFLKVAFSYKGEVSCKPDNNILSNEDQGLEVALEVGADEVIYAKDEETDS 631
K G L T + F KG C + +EDQ LE +LE GA+ +DE +
Sbjct: 120 SKNGGNLGETGCVSWMFDQKG--VCVVSGVV--DEDQLLEASLEGGAESYEMTEDETAE- 174
Query: 632 MLYKFFCDPNNITQIKSALQNKKLEVVNSTDYLVPLNRVKITD 760
F + N+ + L+++ +V ++ +P N +++T+
Sbjct: 175 ----VFTEVANLEILNQTLKDQGFKVTDAELRWIPSNHLEVTE 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,102,733
Number of Sequences: 369166
Number of extensions: 1318465
Number of successful extensions: 3810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3712
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)