Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L10
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 271 2e-72
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 264 2e-70
sp|O65353|RL5_HELAN 60S ribosomal protein L5 253 7e-67
sp|P49405|RL5_CAEEL 60S ribosomal protein L5 249 9e-66
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 248 2e-65
sp|P09895|RL5_RAT 60S ribosomal protein L5 248 2e-65
sp|P47962|RL5_MOUSE 60S ribosomal protein L5 247 3e-65
sp|P46777|RL5_HUMAN 60S ribosomal protein L5 247 4e-65
sp|P22451|RL5_CHICK 60S ribosomal protein L5 247 4e-65
sp|O44248|RL5_ANOGA 60S ribosomal protein L5 247 4e-65
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 271 bits (693), Expect = 2e-72
Identities = 141/275 (51%), Positives = 183/275 (66%), Gaps = 3/275 (1%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
+GKTDY+ARKRL+ QDKNKYNTPKYR++VRFTN+DI+CQI YARI+GD V+ +AY+HELP
Sbjct: 25 QGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
RYG+K +DE Y G T++DG +E +D + F A
Sbjct: 85 RYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRA 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TGA VFGAMKGA DGGL+IPHS KRFPGY E ++A++H+ IFG HV
Sbjct: 145 FLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHV 204
Query: 582 GEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTG- 755
+M L EE+E F RQFS+YI+ G++ + +EE H AIREDP+P K KT + G
Sbjct: 205 SNYMKELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPTPKK--KTDFAGK 262
Query: 756 PKITLKKKMNLLQKRDRIRQIKDTYLAKLRAENQE 860
K +KKM Q+RDR++Q K ++ LRA+ QE
Sbjct: 263 TKRWNRKKMTFSQRRDRVKQKKASF---LRAKQQE 294
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 264 bits (675), Expect = 2e-70
Identities = 135/272 (49%), Positives = 177/272 (65%), Gaps = 3/272 (1%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRL+ QDKNKYNTPKYRL+VR +N+D+ CQ+ Y+RI+GD ++ +AYSHELP
Sbjct: 25 EGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
RYG+K +D Y G TDV G ++E +D F
Sbjct: 85 RYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TG VFGAMKGAVDGGLN+PHS KRFPGY E K+NA++H+ IFG HV
Sbjct: 145 YLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHV 204
Query: 582 GEFMSVLE-ENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTE-KTPYTG 755
E+M LE ++E F RQFSKYI+ G++ + IE HEAIR DPS K E K
Sbjct: 205 AEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVK 264
Query: 756 PKITLKKKMNLLQKRDRIRQIKDTYLAKLRAE 851
K K+K+ L ++++RI+Q K +++ +L+A+
Sbjct: 265 QKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 296
>sp|O65353|RL5_HELAN 60S ribosomal protein L5
Length = 297
Score = 253 bits (645), Expect = 7e-67
Identities = 129/274 (47%), Positives = 180/274 (65%), Gaps = 2/274 (0%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDY+ARKRLI QDKNKYNTPKYRLVVRF+NRDI CQ+ Y+RI+GDK+L +AY+HELP
Sbjct: 25 EGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
+YG+K +D+ Y+G+T+V G+ +++ +++ F
Sbjct: 85 QYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL+RT+TGA VFGAMKGAVDGGLNI HS KRFPG+ E ++NAD+H+ IFG+HV
Sbjct: 145 YLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHV 204
Query: 582 GEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGP 758
E+M L EE++ + RQFS+YI+ G++ + IE HEAIR +P+ K +
Sbjct: 205 AEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAKKAHPKK 264
Query: 759 KITLKKKMNLLQKRDRIRQIKDTYLAKLRAENQE 860
+ T +KK+ Q++ ++ K +L K+ A E
Sbjct: 265 RWT-EKKLTREQRQGKVAAAKAEWLKKIEAGEVE 297
>sp|P49405|RL5_CAEEL 60S ribosomal protein L5
Length = 293
Score = 249 bits (635), Expect = 9e-66
Identities = 123/266 (46%), Positives = 173/266 (65%), Gaps = 6/266 (2%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRL QDKNKYNTPKYRL+VR TN+D++ Q+ Y++I+GD V++SAYSHELP
Sbjct: 25 EGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLEIDEERRPFTAV 404
RYGLK +D Y G ++ G+ ++E + +R PF AV
Sbjct: 85 RYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAV 144
Query: 405 LDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVG 584
LD GL RT+TG+ +F MKG DGG+N+PHSE RF G+ +E +YNA+ H+DRI GKHV
Sbjct: 145 LDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVA 204
Query: 585 EFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTP----Y 749
++M+ L EE+E + RQFSK++ AG++ +N+ T VH AIR D SPA + +
Sbjct: 205 DYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPSKRH 264
Query: 750 TGPKITL-KKKMNLLQKRDRIRQIKD 824
T ++T ++K + K+ + Q+K+
Sbjct: 265 TAKRLTYDERKQRVADKKALLLQLKE 290
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 248 bits (633), Expect = 2e-65
Identities = 127/265 (47%), Positives = 172/265 (64%), Gaps = 2/265 (0%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP
Sbjct: 25 EGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
+YG+K +D+ Y G +V G ++E ID E FT
Sbjct: 85 KYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++N ++H+ IF ++V
Sbjct: 145 YLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNV 204
Query: 582 GEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGP 758
E+M +L EE+E + +QFS+YI+ G++ + +E+ H IRE+P K K
Sbjct: 205 AEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKE-VKK 263
Query: 759 KITLKKKMNLLQKRDRIRQIKDTYL 833
K + K++L QK+DR+ Q K ++L
Sbjct: 264 KRWNRAKLSLEQKKDRVAQKKASFL 288
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 248 bits (632), Expect = 2e-65
Identities = 128/265 (48%), Positives = 174/265 (65%), Gaps = 2/265 (0%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP
Sbjct: 25 EGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
+YG+K MD+ Y G +V+G ++E ID + FT
Sbjct: 85 KYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G++V
Sbjct: 145 YLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNV 204
Query: 582 GEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGP 758
++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P K K
Sbjct: 205 ADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKRE-VKK 263
Query: 759 KITLKKKMNLLQKRDRIRQIKDTYL 833
K + KM+L QK+DR+ Q K ++L
Sbjct: 264 KRWNRPKMSLAQKKDRVAQKKASFL 288
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5
Length = 297
Score = 247 bits (631), Expect = 3e-65
Identities = 128/265 (48%), Positives = 174/265 (65%), Gaps = 2/265 (0%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP
Sbjct: 25 EGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
+YG+K MD+ Y G +V+G ++E ID + FT
Sbjct: 85 KYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G++V
Sbjct: 145 YLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNV 204
Query: 582 GEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGP 758
++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P K K
Sbjct: 205 ADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKRE-VKK 263
Query: 759 KITLKKKMNLLQKRDRIRQIKDTYL 833
K + KM+L QK+DR+ Q K ++L
Sbjct: 264 KRWNRPKMSLAQKKDRVAQKKASFL 288
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5
Length = 297
Score = 247 bits (630), Expect = 4e-65
Identities = 128/265 (48%), Positives = 173/265 (65%), Gaps = 2/265 (0%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP
Sbjct: 25 EGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
+YG+K MD+ Y G +V G ++E ID + FT
Sbjct: 85 KYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G++V
Sbjct: 145 YLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNV 204
Query: 582 GEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGP 758
++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P K K
Sbjct: 205 ADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKE-VKK 263
Query: 759 KITLKKKMNLLQKRDRIRQIKDTYL 833
K + KM+L QK+DR+ Q K ++L
Sbjct: 264 KRWNRPKMSLAQKKDRVAQKKASFL 288
>sp|P22451|RL5_CHICK 60S ribosomal protein L5
Length = 297
Score = 247 bits (630), Expect = 4e-65
Identities = 125/265 (47%), Positives = 173/265 (65%), Gaps = 2/265 (0%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRL+ QDKNKYNTPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP
Sbjct: 25 EGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
+YG+K +D+ Y G +V G ++E +D + FT
Sbjct: 85 KYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++H+ I G++V
Sbjct: 145 YLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNV 204
Query: 582 GEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGP 758
++M ++EE+E + +QFS+YI+ I+ + +EE H AIR++P K K
Sbjct: 205 ADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVKKK 264
Query: 759 KITLKKKMNLLQKRDRIRQIKDTYL 833
++ KM+L QK+DR+ Q K ++L
Sbjct: 265 RVN-STKMSLAQKKDRVAQKKASFL 288
>sp|O44248|RL5_ANOGA 60S ribosomal protein L5
Length = 327
Score = 247 bits (630), Expect = 4e-65
Identities = 127/241 (52%), Positives = 157/241 (65%), Gaps = 4/241 (1%)
Frame = +3
Query: 45 EGKTDYYARKRLIWQDKNKYNTPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELP 224
EGKTDYYARKRLI+QDKNKYNTPK+RL+VR +NRDI CQI Y RI+GD+++ +AYSHELP
Sbjct: 25 EGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYRRIEGDRIVCAAYSHELP 84
Query: 225 RYGLKXXXXXXXXXXXXXXXXXXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTA 401
RYG+K +D Y G TDV G+ +E +DE F
Sbjct: 85 RYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRC 144
Query: 402 VLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHV 581
LD GL RT+TG+ VFGAMKGAVDGGLNIPHS KRFPGYS E +NA++H+D IFG HV
Sbjct: 145 YLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHV 204
Query: 582 GEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKT--EKTPYT 752
+M L EE+E F RQFSKYI GI ++IE H +IR+ P + ++P +
Sbjct: 205 ANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRKIPPSRRNPRRRSPRS 264
Query: 753 G 755
G
Sbjct: 265 G 265
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,625,302
Number of Sequences: 369166
Number of extensions: 1991129
Number of successful extensions: 6981
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6894
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)