Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L08
(239 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20464|YTRE_LEPBI Hypothetical 22 kDa protein in trpE 5'... 28 6.6
sp|P39006|PSD1_YEAST Phosphatidylserine decarboxylase proen... 28 8.6
>sp|P20464|YTRE_LEPBI Hypothetical 22 kDa protein in trpE 5'region
Length = 189
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Frame = +3
Query: 84 IDAISRCRRCDGC--WE 128
+DA CRRCDGC WE
Sbjct: 27 LDACLHCRRCDGCRIWE 43
>sp|P39006|PSD1_YEAST Phosphatidylserine decarboxylase proenzyme 1, mitochondrial
precursor [Contains: Phosphatidylserine decarboxylase
beta chain; Phosphatidylserine decarboxylase alpha
chain]
Length = 500
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 137 RKHFPTAITPTAPTNGINPPNKLILNPSFLLFGS 36
R+HFP + AP N PN +LN L GS
Sbjct: 358 RRHFPGDLFSVAPYFQRNFPNLFVLNERVALLGS 391
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,493,782
Number of Sequences: 369166
Number of extensions: 413759
Number of successful extensions: 966
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)