Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L04
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 113 1e-25
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 113 1e-25
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 113 1e-25
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 111 6e-25
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 109 2e-24
sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein 108 4e-24
sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein 107 9e-24
sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein 106 1e-23
sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (... 106 2e-23
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 106 2e-23
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 113 bits (283), Expect = 1e-25
Identities = 55/105 (52%), Positives = 68/105 (64%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEK
Sbjct: 542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEK 601
Query: 182 VCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 602 VCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 113 bits (283), Expect = 1e-25
Identities = 55/105 (52%), Positives = 68/105 (64%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEK
Sbjct: 542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEK 601
Query: 182 VCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 602 VCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 113 bits (283), Expect = 1e-25
Identities = 55/105 (52%), Positives = 68/105 (64%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEK
Sbjct: 542 LESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEK 601
Query: 182 VCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 602 VCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 111 bits (277), Expect = 6e-25
Identities = 56/108 (51%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESYA+ MK+TVEDEKLK KIS+ D++ I+DKC E IGWLDKNQ A ++EF++ KELEK
Sbjct: 542 LESYAFNMKSTVEDEKLKGKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEK 601
Query: 182 VCNPIMTKMYQ---XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 602 VCNPIITKLYQSAGGMPGGMPEGMPGGFPGAGAAPGGGSSGPTIEEVD 649
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 109 bits (273), Expect = 2e-24
Identities = 55/110 (50%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESYA+ MK+TVEDEKL+ KIS+ D+ I++KC E IGWLDKNQ A K+E+++H KELEK
Sbjct: 542 LESYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEK 601
Query: 182 VCNPIMTKMYQ-----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 602 VCNPIITKLYQGAGGMPGGMPEGMAGGFPGAGGAAPGGGGSSGPTIEEVD 651
>sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein
Length = 649
Score = 108 bits (270), Expect = 4e-24
Identities = 55/108 (50%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESYA+ MK+TVEDEKLK KIS+ D+ I+DKC E I WLDKNQ A KDE+++ K+LEK
Sbjct: 542 LESYAFNMKSTVEDEKLKGKISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEK 601
Query: 182 VCNPIMTKMYQ---XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 602 VCNPIITKLYQSDGGMPGGMPDGMPGGFQELGAAPGGGSSGPTIEEVD 649
>sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein
Length = 644
Score = 107 bits (267), Expect = 9e-24
Identities = 55/105 (52%), Positives = 65/105 (61%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESYA+ MK T+EDEKLKDKISE D+K I +KC E + WLD NQ A KDEF++ KELE
Sbjct: 541 LESYAFNMKQTIEDEKLKDKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQKELES 600
Query: 182 VCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 601 VCNPIITKLYQSAGGMPGGMPGGMPGGAPGAGSTG-GGPTIEEVD 644
>sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein
Length = 654
Score = 106 bits (265), Expect = 1e-23
Identities = 53/106 (50%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESY Y MK TVEDEK+K KISE D+K I+ KC E + W+DKNQ A KD++++ KELEK
Sbjct: 549 LESYCYNMKQTVEDEKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEK 608
Query: 182 VCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQ-GPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 609 VCNPIITKLYQAGGGMPGGMPGGMPGGMPGSGSKASSGGPTIEEVD 654
>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Length = 639
Score = 106 bits (264), Expect = 2e-23
Identities = 53/105 (50%), Positives = 66/105 (62%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
LESY Y +K TVEDEKL+ KISE D+ I+DKCQE I WLD+NQ A KDE+++ KELE+
Sbjct: 545 LESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELER 604
Query: 182 VCNPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI++K+YQ GPT+EEVD
Sbjct: 605 VCNPIISKLYQ----------GGPGGGSGGGGSGASGGPTIEEVD 639
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 106 bits (264), Expect = 2e-23
Identities = 54/109 (49%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
Frame = +2
Query: 2 LESYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEK 181
L+SYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEK
Sbjct: 542 LKSYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEK 601
Query: 182 VCNPIMTKMYQ----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 316
VCNPI+TK+YQ GPT+EEVD
Sbjct: 602 VCNPIITKLYQSAGGMPGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 650
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,450,866
Number of Sequences: 369166
Number of extensions: 353891
Number of successful extensions: 1464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)