Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_K20
(260 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein ... 115 4e-26
sp|Q71TY3|RS27_RAT 40S ribosomal protein S27 >gi|51316667|s... 115 4e-26
sp|P47904|RS27_XENLA 40S ribosomal protein S27 115 4e-26
sp|P55833|RS27_HOMAM 40S ribosomal protein S27 111 6e-25
sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4 104 7e-23
sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese e... 102 4e-22
sp|O74330|RS27_SCHPO 40S ribosomal protein S27 101 5e-22
sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1 99 3e-21
sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2 99 4e-21
sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B (YS20) (R... 94 1e-19
>sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein
sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like protein
sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like protein
Length = 84
Score = 115 bits (287), Expect = 4e-26
Identities = 52/77 (67%), Positives = 58/77 (75%)
Frame = +3
Query: 3 LHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPT 182
LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQPT
Sbjct: 8 LHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPT 67
Query: 183 GGKARLMEGCSFRKKQN 233
GGKARL EGCSFR+KQ+
Sbjct: 68 GGKARLTEGCSFRRKQH 84
>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27
sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27
sp|P42677|RS27_HUMAN 40S ribosomal protein S27 (Metallopan-stimulin 1) (MPS-1)
Length = 84
Score = 115 bits (287), Expect = 4e-26
Identities = 52/77 (67%), Positives = 58/77 (75%)
Frame = +3
Query: 3 LHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPT 182
LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQPT
Sbjct: 8 LHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPT 67
Query: 183 GGKARLMEGCSFRKKQN 233
GGKARL EGCSFR+KQ+
Sbjct: 68 GGKARLTEGCSFRRKQH 84
>sp|P47904|RS27_XENLA 40S ribosomal protein S27
Length = 84
Score = 115 bits (287), Expect = 4e-26
Identities = 52/77 (67%), Positives = 58/77 (75%)
Frame = +3
Query: 3 LHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPT 182
LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQPT
Sbjct: 8 LHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPT 67
Query: 183 GGKARLMEGCSFRKKQN 233
GGKARL EGCSFR+KQ+
Sbjct: 68 GGKARLTEGCSFRRKQH 84
>sp|P55833|RS27_HOMAM 40S ribosomal protein S27
Length = 84
Score = 111 bits (277), Expect = 6e-25
Identities = 50/77 (64%), Positives = 55/77 (71%)
Frame = +3
Query: 3 LHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPT 182
LHP RLV PNSYFMDVKCPGC KI+T+FSHA +VV C GC LCQPT
Sbjct: 8 LHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPT 67
Query: 183 GGKARLMEGCSFRKKQN 233
GGKA+L +GCSFRKKQN
Sbjct: 68 GGKAKLTDGCSFRKKQN 84
>sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4
Length = 84
Score = 104 bits (259), Expect = 7e-23
Identities = 47/75 (62%), Positives = 52/75 (69%)
Frame = +3
Query: 3 LHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPT 182
LHP RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LCQPT
Sbjct: 10 LHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPT 69
Query: 183 GGKARLMEGCSFRKK 227
GGKARL EGCSFRKK
Sbjct: 70 GGKARLQEGCSFRKK 84
>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese efficiency related protein 1)
Length = 86
Score = 102 bits (253), Expect = 4e-22
Identities = 44/60 (73%), Positives = 50/60 (83%)
Frame = +3
Query: 48 RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 227
RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C GC LCQPTGGKARL EGCSFR+K
Sbjct: 25 RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRK 84
>sp|O74330|RS27_SCHPO 40S ribosomal protein S27
Length = 83
Score = 101 bits (252), Expect = 5e-22
Identities = 43/60 (71%), Positives = 49/60 (81%)
Frame = +3
Query: 48 RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 227
+LV P S+FMDVKCPGC ITT+FSHA +VV+C C LCQPTGGKARLMEGCSFR+K
Sbjct: 23 QLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82
>sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1
Length = 84
Score = 99.0 bits (245), Expect = 3e-21
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +3
Query: 48 RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 227
RLV SPNS+FMDVKC GC ITT+FSH+ +VVMC C LC PTGGKA+L EGCSFRKK
Sbjct: 25 RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84
>sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2
Length = 86
Score = 98.6 bits (244), Expect = 4e-21
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +3
Query: 48 RLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLMEGCSFRKK 227
RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LCQPTGGKA+L EGCSFR+K
Sbjct: 25 RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRK 84
>sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B (YS20) (RP61)
Length = 82
Score = 94.0 bits (232), Expect = 1e-19
Identities = 42/75 (56%), Positives = 48/75 (64%)
Frame = +3
Query: 3 LHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPT 182
LHP LV P SYF+DVKCPGCL ITT+FSHA + V C C+ LC PT
Sbjct: 8 LHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPT 67
Query: 183 GGKARLMEGCSFRKK 227
GGKA+L EG SFR+K
Sbjct: 68 GGKAKLSEGTSFRRK 82
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,848,610
Number of Sequences: 369166
Number of extensions: 483746
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)