Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_K16
(834 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic 325 1e-88
sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic 311 2e-84
sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic 311 2e-84
sp|P14152|MDHC_MOUSE Malate dehydrogenase, cytoplasmic 310 2e-84
sp|P57106|MDHD_ARATH Malate dehydrogenase, cytoplasmic 2 276 5e-74
sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 276 7e-74
sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic 275 9e-74
sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic 271 1e-72
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic 271 2e-72
sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic 270 3e-72
>sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic
Length = 332
Score = 325 bits (832), Expect = 1e-88
Identities = 167/276 (60%), Positives = 199/276 (72%), Gaps = 2/276 (0%)
Frame = +3
Query: 12 GPITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAF 191
GP+ V++TGAAGQI Y L + VA+GN+FG+ Q I LHLLDIP+ L+G++MEL+DCAF
Sbjct: 3 GPLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAF 62
Query: 192 PQLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKK 371
L + T L+EAF D+D ALMVGAMPRK+GMER+DLL +NV IFK QGEALDKYAKK
Sbjct: 63 TVLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKK 122
Query: 372 TVRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCI 551
TV+V VVGNPANTNCLIMSKYAPSIPKENF+ALTRLDHNRAI Q+A KAGVP V+
Sbjct: 123 TVKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVC 182
Query: 552 IWGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXX 731
IWGNHSN Q+PD H +V DGK+ + + DE W+K F+ VQ RGAAVI
Sbjct: 183 IWGNHSNKQFPDLSHAVVT-KDGKQHPAKELINDEKWVKEVFIPCVQNRGAAVIGLRKLS 241
Query: 732 XXXXXXXXXXDHCRDWFHATK--EWVSMAVYSDGSY 833
D RDW+ TK EWVSM+VYS G +
Sbjct: 242 RAASAAKAIVDQMRDWWFGTKEGEWVSMSVYSTGDH 277
>sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic
Length = 334
Score = 311 bits (796), Expect = 2e-84
Identities = 166/274 (60%), Positives = 200/274 (72%), Gaps = 2/274 (0%)
Frame = +3
Query: 15 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 194
PI V++TGAAGQI Y L++S+ +G+VFG+ QPI L LLDI M+ L+G++MEL+DCA P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 195 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 374
L V AT + AF D+D A++VG+MPR++GMERKDLLKANV IFK QG ALDKYAKK+
Sbjct: 64 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 375 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 554
V+V VVGNPANTNCL SK APSIPKENFS LTRLDHNRA AQIA K GV D V+ II
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 555 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 734
WGNHS+TQYPD +H VK KEV V +AVKD++WLK +F+ TVQ RGAAVI
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 735 XXXXXXXXXDHCRD-WFHATK-EWVSMAVYSDGS 830
DH RD WF + E+VSM + SDG+
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGN 276
>sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic
Length = 334
Score = 311 bits (796), Expect = 2e-84
Identities = 167/274 (60%), Positives = 200/274 (72%), Gaps = 2/274 (0%)
Frame = +3
Query: 15 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 194
PI V++TGAAGQI Y L++S+ +G+VFG+ QPI L LLDI M+ L+G++MEL+DCA P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 195 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 374
L V AT AF D+D A++VG+MPR+EGMERKDLLKANV IFK QG ALDKYAKK+
Sbjct: 64 LLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKS 123
Query: 375 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 554
V+V VVGNPANTNCL SK APSIPKENFS LTRLDHNRA AQIA K GV + V+ II
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVII 183
Query: 555 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 734
WGNHS+TQYPD +H VK GKEV V +A+KD++WLK +F+ TVQ RGAAVI
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSS 242
Query: 735 XXXXXXXXXDHCRD-WFHATK-EWVSMAVYSDGS 830
DH RD WF + E+VSM V SDG+
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGN 276
>sp|P14152|MDHC_MOUSE Malate dehydrogenase, cytoplasmic
Length = 334
Score = 310 bits (795), Expect = 2e-84
Identities = 166/274 (60%), Positives = 201/274 (73%), Gaps = 2/274 (0%)
Frame = +3
Query: 15 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 194
PI V++TGAAGQI Y L++S+ +G+VFG+ QPI L LLDI M+ L+G++MEL+DCA P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 195 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 374
L V AT + AF D+D A++VG+MPR+EGMERKDLLKANV IFK QG AL+KYAKK+
Sbjct: 64 LLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKS 123
Query: 375 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 554
V+V VVGNPANTNCL SK APSIPKENFS LTRLDHNRA +QIA K GV D V+ II
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVII 183
Query: 555 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 734
WGNHS+TQYPD +H VK GKEV V +A+KD++WLK +F+ TVQ RGAAVI
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 735 XXXXXXXXXDHCRD-WFHATK-EWVSMAVYSDGS 830
DH RD WF + E+VSM V SDG+
Sbjct: 243 AMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGN 276
>sp|P57106|MDHD_ARATH Malate dehydrogenase, cytoplasmic 2
Length = 332
Score = 276 bits (706), Expect = 5e-74
Identities = 144/278 (51%), Positives = 183/278 (65%), Gaps = 2/278 (0%)
Frame = +3
Query: 6 ARGPITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDC 185
A+ P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDIP +LNG+ MEL D
Sbjct: 2 AKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVDA 61
Query: 186 AFPQLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYA 365
AFP L V AT D EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+K+A
Sbjct: 62 AFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHA 121
Query: 366 KKTVRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRR 545
+V VV NPANTN LI+ ++APSIP++N + LTRLDHNRA+ Q++ + VP V+
Sbjct: 122 APNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKN 181
Query: 546 CIIWGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXX 725
IIWGNHS+TQYPD +H VK G E V + VK++ WL +F+ TVQ RGAA+I
Sbjct: 182 VIIWGNHSSTQYPDVNHATVKTSVG-EKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240
Query: 726 XXXXXXXXXXXXDHCRDWFHATKE--WVSMAVYSDGSY 833
DH RDW T E +VSM VYSDGSY
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSY 278
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1
Length = 332
Score = 276 bits (705), Expect = 7e-74
Identities = 144/278 (51%), Positives = 182/278 (65%), Gaps = 2/278 (0%)
Frame = +3
Query: 6 ARGPITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDC 185
A+ P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDIP +LNG+ MEL D
Sbjct: 2 AKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELIDA 61
Query: 186 AFPQLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYA 365
AFP L V AT D E V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+K+A
Sbjct: 62 AFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHA 121
Query: 366 KKTVRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRR 545
+V VV NPANTN LI+ ++APSIP++N S LTRLDHNRA+ QI+ + VP V+
Sbjct: 122 APNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKN 181
Query: 546 CIIWGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXX 725
IIWGNHS++QYPD +H V+ G E V + VKD+ WL +F+ TVQ RGAA+I
Sbjct: 182 VIIWGNHSSSQYPDVNHAKVQTSSG-EKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240
Query: 726 XXXXXXXXXXXXDHCRDWFHATKE--WVSMAVYSDGSY 833
DH RDW T E +VSM VYSDGSY
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSY 278
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic
Length = 332
Score = 275 bits (704), Expect = 9e-74
Identities = 142/275 (51%), Positives = 179/275 (65%), Gaps = 2/275 (0%)
Frame = +3
Query: 15 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 194
P+ V++TGAAGQIGY LV +A G + G +QP+ LH+LDIP +LNG+ MEL D AFP
Sbjct: 5 PLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
Query: 195 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 374
L V AT D EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+++A
Sbjct: 65 LLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
Query: 375 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 554
+V VV NPANTN LI+ ++APSIP++N S LTRLDHNRA+ QI+ + V V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVKNVII 184
Query: 555 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 734
WGNHS+TQYPD +H VK G + V + V D+ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSTQYPDVNHATVK-TQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSS 243
Query: 735 XXXXXXXXXDHCRDWFHATKE--WVSMAVYSDGSY 833
DH DW T E WVSM VYSDGSY
Sbjct: 244 ALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSY 278
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic
Length = 332
Score = 271 bits (694), Expect = 1e-72
Identities = 141/275 (51%), Positives = 180/275 (65%), Gaps = 2/275 (0%)
Frame = +3
Query: 15 PITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDCAFP 194
P+ V++TGAAGQIGY LV +A G + G +QP+ LH+LDIP +LNG+ MEL D AFP
Sbjct: 5 PLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
Query: 195 QLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYAKKT 374
L V AT D+ EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL++YA
Sbjct: 65 LLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQYAAPN 124
Query: 375 VRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRRCII 554
+V VV NPANTN LI+ ++APSIP++N + LTRLDHNRA+ QI+ + V+ II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVKNVII 184
Query: 555 WGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXXXXX 734
WGNHS++QYPD + VK G E +V + V D+ WL +F+ TVQ RGAA+I
Sbjct: 185 WGNHSSSQYPDVNPCTVKTGSG-EKAVRELVADDAWLNGEFITTVQQRGAAIIKARKLSS 243
Query: 735 XXXXXXXXXDHCRDWFHATKE--WVSMAVYSDGSY 833
DH RDW T E WVSM VYSDGSY
Sbjct: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY 278
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic
Length = 332
Score = 271 bits (693), Expect = 2e-72
Identities = 143/278 (51%), Positives = 178/278 (64%), Gaps = 2/278 (0%)
Frame = +3
Query: 6 ARGPITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDC 185
A+ P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDI SLNG+ MEL D
Sbjct: 2 AKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVDA 61
Query: 186 AFPQLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYA 365
AFP L V AT D+ EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+K+A
Sbjct: 62 AFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHA 121
Query: 366 KKTVRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRR 545
+V VV NPANTN LI+ ++APSIP+ N S LTRLDHNRA+ QI+ + V V+
Sbjct: 122 AANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVKN 181
Query: 546 CIIWGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXX 725
IIWGNHS+TQYPD +H V G E V V D+ WL +F+ TVQ RGAA+I
Sbjct: 182 VIIWGNHSSTQYPDVNHATVNTPAG-EKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARK 240
Query: 726 XXXXXXXXXXXXDHCRDWFHATKE--WVSMAVYSDGSY 833
DH RDW T + +VSM VYSDGSY
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSY 278
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic
Length = 332
Score = 270 bits (691), Expect = 3e-72
Identities = 142/278 (51%), Positives = 181/278 (65%), Gaps = 2/278 (0%)
Frame = +3
Query: 6 ARGPITVVLTGAAGQIGYCLVHSVASGNVFGQHQPINLHLLDIPQMVPSLNGLIMELEDC 185
A+ P+ V++TGAAGQIGY LV +A G + G QP+ LH+LDIP +LNG+ MEL D
Sbjct: 2 AKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDA 61
Query: 186 AFPQLISVKATADLQEAFHDVDFALMVGAMPRKEGMERKDLLKANVNIFKVQGEALDKYA 365
AFP L V AT D+ EA V+ A+MVG PRKEGMERKD++ NV+I+K Q AL+ +A
Sbjct: 62 AFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHA 121
Query: 366 KKTVRVCVVGNPANTNCLIMSKYAPSIPKENFSALTRLDHNRAIAQIAGKAGVPCDHVRR 545
+V VV NPANTN LI+ ++APSIP++N + LTRLDHNRA+ QI+ + V V+
Sbjct: 122 APNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKN 181
Query: 546 CIIWGNHSNTQYPDFHHGLVKGHDGKEVSVLDAVKDETWLKNDFLKTVQTRGAAVIXXXX 725
IIWGNHS++QYPD +H VK G E V + V D+ WL +F+ TVQ RGAA+I
Sbjct: 182 VIIWGNHSSSQYPDVNHATVKTSTG-EKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240
Query: 726 XXXXXXXXXXXXDHCRDWFHATKE--WVSMAVYSDGSY 833
DH RDW T E +VSM VYSDGSY
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSY 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,923,473
Number of Sequences: 369166
Number of extensions: 1904688
Number of successful extensions: 5265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5163
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)