Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J11
(732 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59282|P25B_HUMAN Protein p25-beta 65 1e-10
sp|Q9BW30|CG38_HUMAN Protein CGI-38 65 2e-10
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 63 9e-10
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 60 6e-09
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 57 4e-08
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 56 1e-07
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 52 2e-06
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 52 2e-06
sp|P32350|KNS1_YEAST Protein kinase KNS1 32 1.7
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 32 1.7
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/149 (33%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Frame = +2
Query: 167 FLEFCESTKKGSTTATDKTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGF 343
F F ES+ G T +K K+C D + KT T+ DVDI F K + + F F
Sbjct: 12 FAAFGESSSSG-TEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQF 70
Query: 344 ENFLDKYFIPAYAKSCKKDAAAISDEVKKKIIS----NGPKAHGATKASKDGATERLTDV 511
+ + + K+ DEV + I P GATKA+ GA +RLTD
Sbjct: 71 KEAVKEL-------GQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDT 123
Query: 512 KGYTGARKEAFDAETXXXXXXEGREYLVD 598
YTG KE FD E+ GRE + D
Sbjct: 124 SKYTGTHKELFD-ESGKGKGIAGREEMTD 151
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 65.1 bits (157), Expect = 2e-10
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Frame = +2
Query: 218 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKYFIPAYAKSCK 394
K K+C D K+ K+ T DVDI F K G + +++ F+ L++ + K
Sbjct: 33 KNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKSK 92
Query: 395 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 574
++A D + + + P G TKA GA +RLTD YTG+ KE FD E+
Sbjct: 93 EEAF---DAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFD-ESGKGKGI 148
Query: 575 EGREYLVDE 601
GR+ ++D+
Sbjct: 149 AGRQDILDD 157
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 62.8 bits (151), Expect = 9e-10
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Frame = +2
Query: 218 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKYFIPAYAKSCK 394
K K+C D K+ K T DVDI F K + +++ F+ L++ + K
Sbjct: 33 KNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKSARVINYEEFKKALEELATKRFKGKSK 92
Query: 395 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 574
++A D + + I P G TKA GA +RLTD YTG+ KE FD E+
Sbjct: 93 EEAF---DAICQLIAGKEPANIGVTKAKTGGAVDRLTDTSKYTGSHKERFD-ESGKGKGI 148
Query: 575 EGREYLVDE 601
GR+ ++D+
Sbjct: 149 AGRQDILDD 157
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 60.1 bits (144), Expect = 6e-09
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Frame = +2
Query: 197 GSTTATDKTI-----KKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLD 358
G T AT K + K+C D + K T DVDI F K G + + F F+ L+
Sbjct: 61 GDTRATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCRTITFEQFQEALE 120
Query: 359 KYFIPAYAKSCKKDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKE 538
+ + ++A EV + I P G TKA RLTD +TG+ KE
Sbjct: 121 ELAKKRFKDKSSEEAVR---EVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKE 177
Query: 539 AFDAETXXXXXXEGREYLVDE 601
FD ++ GR LVDE
Sbjct: 178 RFD-QSGKGKGKAGRVDLVDE 197
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 57.4 bits (137), Expect = 4e-08
Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Frame = +2
Query: 218 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKYFIPAYAKSCK 394
K K+C D ++ ++ T DVDI F K G + + F F+ L++ A +
Sbjct: 73 KNWSKLCRDCQVIDGRSVTVTDVDIVFSKIKGKSCRTITFEQFKEALEEL---AKKRFKD 129
Query: 395 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 574
K A EV K I P G TKA RLTD +TG+ KE FD +
Sbjct: 130 KSAEEAVREVHKLIEGKAPIISGVTKAISSPTVSRLTDTSKFTGSHKERFD-PSGRGKGR 188
Query: 575 EGREYLVDE 601
GR LVDE
Sbjct: 189 AGRVDLVDE 197
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 55.8 bits (133), Expect = 1e-07
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Frame = +2
Query: 218 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKYFIPAYAKSCK 394
K K+C D ++ + T DVDI F K G + + F F+ L++ +
Sbjct: 74 KNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSS 133
Query: 395 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 574
++A EV + I P G TKA RLTD +TG+ KE FD +
Sbjct: 134 EEAVR---EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFD-PSGKGKGK 189
Query: 575 EGREYLVDE 601
GR LVDE
Sbjct: 190 AGRVDLVDE 198
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 52.0 bits (123), Expect = 2e-06
Identities = 47/127 (37%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Frame = +2
Query: 188 TKKGSTTATDKTIK---KICTDAK-LYTKTFTANDVDIEFRKCIGNQKKDVDFAGFENFL 355
TK G+ TAT+ T K K DA L K T I F K G +KK F + L
Sbjct: 22 TKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKK-ATFDETKKVL 80
Query: 356 DKYFIPAYAKSCKKDAAAISDEVKKKIIS-NGPKAHGATKASKDGATERLTDVKGYTGAR 532
+ A+ KK D + +K+ P GA KA+ G RLTD YTGA
Sbjct: 81 -AFVAEDRARQSKKPIQDELDAITEKLAKLEAPSVGGAAKANAAGVYSRLTDHTKYTGAH 139
Query: 533 KEAFDAE 553
KE FDAE
Sbjct: 140 KERFDAE 146
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 51.6 bits (122), Expect = 2e-06
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Frame = +2
Query: 140 IKMSDMKTVFLEFCESTKKG---STTATDKTIKKICTDAKLYTKTFTANDVDIEFRKCIG 310
+ SD F +F +S G + + +DK +K+ AK+ K T D I F+K
Sbjct: 35 VSFSDQFKAFSKFGDSKSDGKLITLSQSDKWMKQ----AKVIDKKITTTDTGIHFKKF-- 88
Query: 311 NQKKDVDFAGFENFLDKYFIPAYAKSCKKDAAAISDEVKKKIISNGPKAHGATKASKDGA 490
+ + + + FLD AK+ K + + E+K+K+ S G + A K A
Sbjct: 89 -KAMKISLSDYNKFLDDL-----AKTKKVELS----EIKQKLASCGAPGVVSVSAGKAAA 138
Query: 491 T-ERLTDVKGYTGARKEAFDAETXXXXXXEGREYLVD 598
+RLTD YTG+ KE FDA + GR +VD
Sbjct: 139 AVDRLTDTSKYTGSHKERFDA-SGKGKGIAGRRNVVD 174
>sp|P32350|KNS1_YEAST Protein kinase KNS1
Length = 737
Score = 32.0 bits (71), Expect = 1.7
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 128 NHNNIKMSDMKTVFLEFCESTKKGSTTATDKTIKKI 235
N IK D KT+ L++ E K+G T T+K++K++
Sbjct: 588 NSTVIKHFDRKTLSLQWPEKNKRGDTITTEKSMKRV 623
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 32.0 bits (71), Expect = 1.7
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Frame = -3
Query: 484 IFAGFCCTMSLWSIANNLLFNFIRNCCSIFLT---*FCVSWYEIFIQEIFKSSKINIFFL 314
+F G C + LW + N L++ I C +L FC+ + ++I +F + FFL
Sbjct: 50 LFVGLCLFLLLWFMLFN-LYSLILYYCITYLNLYLLFCIV-FLLYIAFLFLFCFLCDFFL 107
Query: 313 ITDTFSKFNIDIISSKGFCVQFSISAYFLYCF--ICSCSGTFFCRFTKLQKHCFHIRHFY 140
F+ + F ++F + FL CF +C C TF F L F + F+
Sbjct: 108 ----FNNLLVGDSFMDVFFIRFLLC--FLECFSLLCRCLSTFLRLFCNLLSSHFLLLMFF 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,995,965
Number of Sequences: 369166
Number of extensions: 1231489
Number of successful extensions: 3619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3618
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)